BAC Information

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BAC

Clone NameMSMg01-487D21
Chromosome9 (Build37)
Map Location 20,553,305 - 20,553,841
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487D21.T7 (MSMg01no487_d21.b1)MSMg01-487D21.TJ (MSMg01no487_d21.g1)
ACCAG566253AG566254
length776789
length of high quality
(start - end)		543 (48 - 590)121 (75 - 195)
definitionCHROMAT_FILE: MSMg01no487_d21.b1 PHD_FILE: MSMg01no487_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:47 2005CHROMAT_FILE: MSMg01no487_d21.g1 PHD_FILE: MSMg01no487_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAACCAATGAGATGAGGTACAGTCCCCGCCTGGATACAATAAA
AACTAGGTCACCTGGTTTTGGTCATCACACTCTTTTTTTACAAAAAGAAA
TTGTATTGCCGGTTCACTTTCAATTTGTTTGTATTTCTTTGTGCAACTGA
GGATTTTTTTTCCAACTTATGCATTCACATGCATGTGAACAGACCCTGAA
CTGTAATAAAAAATTCCCTATGTGTCCTCTCCCTTGAATTGCTTTTGGCA
CTTATCCTACTGCCAAAGAAGGAGACCTGGCAGGGGTCGTGGTCCTGGAA
TCCAGGTTGAGCGAAGGCAGATCTCACCTATTCCCGTTTTACAGTTCACC
ACTGCCCTCCCACCCTGAAGAGCCCTCAAAGGTCTGACCCCTTTCGGGGA
CAACGGGCTAAAGGATTGGTGGAGATGCCTTCCACCTAAAACCCAGGTCC
TGTCTTGAGTTCTCAAGGGCTCTGGTACCAGGCTCTGGGGATCAAGCAGT
CAAGTATCTACCTATGTGTCAGCAATGCCTCTTGACAAGAACTTGGGTGA
AGAAACAGGTGTCTGTGTGTGTGGTGGGGAGCGCACAAGGGGGCCACAGA
AAGACAGTGGATGTCTTTATCAATTGCCAGCTTACTGAGTCAGCCTTGAG
TCAGGNTGGCTCTCTGATCCCCNAGTCTGATATCTTCACTAGGNTGGCTG
GCCAGTAAGCTCCCAGCATCCACCTG

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCCCAGCACTGCACTGCATAAAC
CATGTATGGACACACTATAATCATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGTG
TGTGTGGCTGGGAGTGCATGAGTGCATGACCGGCCTCAGCTACATAGTGC
GGATCTGTCGGGAGGTGGAGACCCGGACGGGCGGGGGGGGGGGGGGGGGC
GGGGGGGGGGGGGGGCGGGGGCGCGTGGGGCGGGGGGGGGGGGGAGAGAG
AGGGACCGCTGCGCAGAGCTATGTCACTTCTGAGAAGGAAAATAGGAACT
TGTCGGAAAATCCAAGGACCCCTCCACCCCAGAGCAAAGGGTAAGTTTGC
AGAAAGACACACAGGTGACATTCATAGCAGTGGATTTTCCAATAATGAGT
AAGCCAGCCATCCTGGCGAGTGTGCATATAAGCCAGGACACTGATCTAAC
TGACCTTTCAGCCCCATGCAGGGGGACTATGAATGCCCACTCCAGCCTTG
GTCTACATTTCATCACAAGCATTGTTCTCAGGAAAAGACACTGGAGAGAA
ACCAGCCTAGAGTTTATGATCCCTTCCATATAAAATGGCCAGGAAAAGGC
GAATCCCTGGGCGCCGGGGAGGGAAATTCCCGGAGATGACTCTTCCGGGC
CGGGGAGAGGAGACAATGGGGGGACCTCCGCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_d21.b1 MSMg01no487_d21.b1 CHROMAT_FILE:
MSMg01no487_d21.b1 PHD_FILE: MSMg01no487_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:47 2005
         (543 letters)



>mm_chr9_20553101_20554041
          Length = 941

 Score =  957 bits (495), Expect = 0.0
 Identities = 528/539 (97%), Gaps = 2/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaccaatgagatgaggtacagtccccgcctggatacaataaaaactaggtcac 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 gaattccaaccaatgagatgaggtacagtccccgcctgaatacaataaaaactaggtcac 682

                                                                       
Query: 65  ctggttttggtcatcacactctttttttacaaaaagaaattgtattgccggttcactttc 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 ctggttttggtcatcacactc-ttttttacaaaaagaaattgtattgccagttcactttc 623

                                                                       
Query: 125 aatttgtttgtatttctttgtgcaactgaggattttttttccaacttatgcattcacatg 184
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 622 aatttgtttgtatttctatgtgcaactgagga-tttttttccaacttatgcattcacatg 564

                                                                       
Query: 185 catgtgaacagaccctgaactgtaataaaaaattccctatgtgtcctctcccttgaattg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 catgtgaacagaccctgaactgaaataaaaaattccctatgtgtcctctcccttgaattg 504

                                                                       
Query: 245 cttttggcacttatcctactgccaaagaaggagacctggcaggggtcgtggtcctggaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 cttttggcacttatcctactgccaaagaaggagacctggcaggggtcatggtcctggaat 444

                                                                       
Query: 305 ccaggttgagcgaaggcagatctcacctattcccgttttacagttcaccactgccctccc 364
           |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct: 443 ccaggttgagcgaaggcagagcccacctattcccgtcttacagttcaccactgccctccc 384

                                                                       
Query: 365 accctgaagagccctcaaaggtctgacccctttcggggacaacgggctaaaggattggtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 accctgaagagccctcaaaggtctgacccctttcggggacaacgggctaaaggattggtg 324

                                                                       
Query: 425 gagatgccttccacctaaaacccaggtcctgtcttgagttctcaagggctctggtaccag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagatgccttccacctaaaacccaggtcctgtcttgagttctcaagggctctggtaccag 264

                                                                      
Query: 485 gctctggggatcaagcagtcaagtatctacctatgtgtcagcaatgcctcttgacaaga 543
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctctggggatcaagcagccaagtatctacctatgtgtcagcaatgcctcttgacaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 941
Length adjustment: 10
Effective length of query: 533
Effective length of database: 931
Effective search space:   496223
Effective search space used:   496223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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