Query= MSMg01no487_f07.b1 MSMg01no487_f07.b1 CHROMAT_FILE:
MSMg01no487_f07.b1 PHD_FILE: MSMg01no487_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:55 2005
(605 letters)
>mm_chr9_53330685_53331689
Length = 1005
Score = 849 bits (439), Expect = 0.0
Identities = 448/451 (99%)
Strand = Plus / Minus
Query: 8 ttctcactgttttggtgggagtgtctttcaaaaggaaccattgactcgtaatagaacccg 67
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttctcactgcattggtgggagtgtctttcaaaaggaaccattgactcgtaatagaacccg 392
Query: 68 tagtttcttgaaggatcattttgaaccaaatgttcttaatgtgtgaacacttaagtgaca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagtttcttgaaggatcattttgaaccaaatgttcttaatgtgtgaacacttaagtgaca 332
Query: 128 ccctttatgtgtgagccctgtggtctttctcatctgataacaaggaaagctggatgttgc 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 331 ccctttatgtgtgagccctgtggtctttctcatctgataaaaaggaaagctggatgttgc 272
Query: 188 ttaagtaatatcattctttccattttaaggatagacgtagtatatcgagagcaaagtagt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttaagtaatatcattctttccattttaaggatagacgtagtatatcgagagcaaagtagt 212
Query: 248 gagtgggcctggagacatggctcagaggttaagagcactgatcttccagaggtcctcagt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gagtgggcctggagacatggctcagaggttaagagcactgatcttccagaggtcctcagt 152
Query: 308 tcaattcccagcaaccacatggtggctcacaaccatctgtaatgggatctggtgtcctct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tcaattcccagcaaccacatggtggctcacaaccatctgtaatgggatctggtgtcctct 92
Query: 368 tctggtgtgtctgaagacagctgcagtgtacttatataataataaaagaacaaagtggta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tctggtgtgtctgaagacagctgcagtgtacttatataataataaaagaacaaagtggta 32
Query: 428 aaatattttggaagcattggtacacatctgt 458
|||||||||||||||||||||||||||||||
Sbjct: 31 aaatattttggaagcattggtacacatctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_f07.g1 MSMg01no487_f07.g1 CHROMAT_FILE:
MSMg01no487_f07.g1 PHD_FILE: MSMg01no487_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:55 2005
(583 letters)
>mm_chr9_53153012_53153990
Length = 979
Score = 1065 bits (551), Expect = 0.0
Identities = 574/585 (98%), Gaps = 8/585 (1%)
Strand = Plus / Plus
Query: 1 ctatggtgtacggcacaccggtgactatcccagcatggttacacaggggctgataaccgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ctatggtgtacggcacaccggtgactatcccagcatggttacacaggggctgataaccat 260
Query: 61 gacttctggatgagaattgaagcccacccttctgttccttaaagatgatttaattccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttctggatgagaattgaagcccacccttctgttccttaaagatgatttaattccctt 320
Query: 121 caatgcgaggagctttggtggatccacctaaccacttctcagacatgcccaaatttgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgcgaggagctttggtggatccacctaaccacttctcagacatgcccaaatttgcct 380
Query: 181 gatccatagggcgtacacagcttgggccgttcagctgcaaactctcttacataagcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatccatagggcgtacacagcttgggccgttcagctgcaaactctcttacataagcagaa 440
Query: 241 aggtcagatactattttggaaagttaaaaggcacatcgtattttccctgaatttatattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtcagatactattttggaaagttaaaaggcacatcgtattttccctgaatttatattc 500
Query: 301 cttgtgcctcttgctccgtcttcccttctttctctttcccattttctagttgaaaaataa 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cttgtgcctcttgctctgtcttcccttctttctctttcccattttctagttgaaaaa-aa 559
Query: 361 tccaagctggattggagtagaagactctaagacctttagccaaagaattcagagtta--g 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 tccaagctgga-----gtagaagactctaagacctttagccaaagaattcagagttaaag 614
Query: 419 agatctctccttcttaggctgtgatggtaggtgtggtgcagacagatgagcagctggaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agatctctccttcttaggctgtgatggtaggtgtggtgcagacagatgagcagctggaag 674
Query: 479 aagcaagatgtggggagagtctgagtttcatcctgggtagccagtggcttccttgatctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aagcaagatgtggggagagtctgagtttcatcctgggtagccagtggcttccttgatctg 734
Query: 539 attatctttacgaagtttgagccccgtgaacagttttacatgaag 583
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 735 attatctttatgaagtttgagccccgtgaacagttttacatgaag 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 979
Length adjustment: 10
Effective length of query: 573
Effective length of database: 969
Effective search space: 555237
Effective search space used: 555237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
