BAC Information

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BAC

Clone NameMSMg01-487H01
Chromosome9 (Build37)
Map Location 77,423,826 - 77,424,278
singlet/doubletsinglet
Overlap genenone
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
Downstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487H01.T7 (MSMg01no487_h01.b1)MSMg01-487H01.TJ (MSMg01no487_h01.g1)
ACCAG566403AG566404
length747750
length of high quality
(start - end)
582 (51 - 632)621 (79 - 699)
definitionCHROMAT_FILE: MSMg01no487_h01.b1 PHD_FILE: MSMg01no487_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:03 2005CHROMAT_FILE: MSMg01no487_h01.g1 PHD_FILE: MSMg01no487_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCAGTTCCGTAGGCTAGGCTACCCTAGGATTCTAGGAT
TGCAAGCATGGTACTGGCTTCTTCTGTGAGTAATGGGGATCAAAGGCATG
TCTTTGTGCTTGCTTCCCAGCCTTAGCAATAGGCTTCTGACTAGGTTTAT
GGTAACAGGTATGTATTCTGTTCCACGAGTAGAATAGACCTCAAATCCAA
TGAAAAGGAAGTGGGTTATCTCCCAGACAGTCATGTCAGGGGTCATACCT
TGCCTAGGTAGGACCACTGATTTTCCTCCCCGAGCAGCCTGCACAGCACC
CTCTGTCTCAGAGAAGCTTCCAGCTCTGCTCCAGGCTGATTTTCCTATGC
TTTCTATCTAAACTGTGTTGTATGTCAGCAACAGAGTCTAGTTCTGGTGA
GTAACCAAGAGTCCTGTGTCCTTTTGGTGTTGTTGGGGCTCCACGGCCAA
CAACTCAGAGAGAAGGGTCCTGCTTCCCAGAGTTAGGATTTTCATTTAAA
AATCCACGACTTCTAGAAACAGCACTATTCACCTGTACAGAATACCTCTG
TTCAGAGTCTTTATTTTTTATTTCATTTTCGACTTAGCTAGTAAAATAAT
AGGTTTTTATTTGACCTTTTCATACATCTGTAGCTTTAGTTAACCCTACT
CCATAGTCATGATTTCCCCCACCCCGCTGACCTATTCCTCTTTAAAC
NNCCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGCTATTCTGAGGAATAT
TAGACTAAGATGCAGCGTTGAGAGCACTGCAGACAACAGAGGCCTGGCTT
TGTAAAGTCTCAGAGGGAAGCAAAGACTCTATTGGAACCACATCACATGT
AAGGTATTCTGACGTGAGAATCCGTCAGGCTGCAGGATCAGGAATGATTA
ACAAAAGACCGGGGCCACAGAACTGAAACCTTTGTTTTTCTGGAACAATT
GATGCTGGTTGGGTGGAGCTGAGGAATTAGCTTTCGTCCTATTTAGGGCT
CTACGGCTGTGGTGAAACACCAGAACCAAAAGCACCTTGAAGAGGAAGAG
GTTCGTTGTGTTTACACATCTTAGCTCATCATCCAGGGAAGTCAGGGTAG
GACCTCGAGGCAGGAACCTGAGGCAGGAACTGATGTAGCGGCTCACTGGC
TTCATCAGTCAGTGTGCTTGCTTCCTTCCTCCCTTCTTCCCTCCCTCCTT
CTGTCTGTCTATCTCTGTCTTTTGTCCTCTCCTTCAAAAATTTATTTATT
TATTTTATATATACAAGTGCTCTGTTTTCATGTACAGCAGAAGAGGGAAT
CAGATTTCCATTATAGATGGTTGTGAGCCACCATGGATATTGAACTCAGG
ACCTCTAGAAGAGCAGCTAGTGCTCTTAACCACTGAGCCACCTCTCAGCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_h01.b1 MSMg01no487_h01.b1 CHROMAT_FILE:
MSMg01no487_h01.b1 PHD_FILE: MSMg01no487_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:03 2005
         (582 letters)



>mm_chr9_77423826_77424807
          Length = 982

 Score =  729 bits (377), Expect = 0.0
 Identities = 425/453 (93%), Gaps = 19/453 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactcagttccgtaggctaggctaccctaggattctaggattgcaagcatggta 63
           ||||||||||||||   ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 453 ggaattcactcagtagggtaggctaggctaccctaggattctaggatttcaagtatggta 394

                                                                       
Query: 64  ctggcttcttctgtgagtaatggggatcaaaggcatgtctttgtgcttgcttcccagcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctggcttcttctgtgagtaatggggatcaaaggcatgtctttgtgcttgcttcccagcct 334

                                                                       
Query: 124 tagcaataggcttctgactaggtttatggtaacaggtatgtattctgttccacgagtaga 183
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 333 tagcaataggcttctgactaggattatggtaacaggtatgtattctgttccatgagtaga 274

                                                                       
Query: 184 atagacctcaaatccaatgaaaaggaagtgggttatctcccagacagtcatgtcaggggt 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagacctcaaatccaacgaaaaggaagtgggttatctcccagacagtcatgtcaggggt 214

                                                                       
Query: 244 cataccttgcctaggtaggaccactgattttcctccccgagcagcctgcacagcaccctc 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 cataccttgcctaggtaggaccattgattttcctccccgagcagcctgcacagcaccctc 154

                                                                       
Query: 304 tgtctcagag-------------------aagcttccagctctgctccaggctgattttc 344
           ||||||||||                   |||||||||||||||||||||||||||||||
Sbjct: 153 tgtctcagagagcaccagcagcagagagcaagcttccagctctgctccaggctgattttc 94

                                                                       
Query: 345 ctatgctttctatctaaactgtgttgtatgtcagcaacagagtctagttctggtgagtaa 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ctatgctttctatctaaactgtgttgtatgtcagcaacagagtctagttctggtgagtaa 34

                                            
Query: 405 ccaagagtcctgtgtccttttggtgttgttggg 437
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ccaagagtcctgtgtccttttggtgttgttggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)