BAC Information

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BAC

Clone NameMSMg01-487I12
Chromosome9 (Build37)
Map Location 59,762,931 - 59,946,120
singlet/doubletdoublet
Overlap geneMyo9a, Nr2e3, EG665389, Thsd4
Upstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487I12.T7 (MSMg01no487_i12.b1)MSMg01-487I12.TJ (MSMg01no487_i12.g1)
ACCAG566473AG566474
length740747
length of high quality
(start - end)
324 (334 - 657)645 (79 - 723)
definitionCHROMAT_FILE: MSMg01no487_i12.b1 PHD_FILE: MSMg01no487_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005CHROMAT_FILE: MSMg01no487_i12.g1 PHD_FILE: MSMg01no487_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,762,931 - 59,763,254)(59,945,476 - 59,946,120)
sequence
TGTCTACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGACTGG
CGCGGNAANCAGNNCTTTTACAAAAAAGTGGCTCAATGAANGGCAACAGG
GATCTGTTATCTTCTTTTACCTTTCTTCTTTGGGGTAAATTTTCTGTTAA
GATTCTAAGATTTGTGCTTTCAGCTAGTTATGTCTAGTTCTATCTATATG
TTAGTTACACAGTTCTTCCTTTTGATAAATTCAACCCACAGAAAAACTGC
CCACTACTTGTACTTTCTTTGATCATCAGAAAGTATCATAACTCCTCATG
TGGGAAGTGTCTTCCTACATACTCTTAATCCATATTTCATCATCATTCTT
CAACTATGTAGGCTTATATTGATTGACAATATTAAGTTTATATCATGTGA
TCTGTCTCGCTATTCCTTCCGGTGTCCTTGTCATTATGAACTTTAGCAGA
CTCTCTTCACAGGCCATAACCATTTTAGCACTGTAGTATGCTTTCTAGTC
ATCTTCATTGTTACCTACTTAAATCTTAAGGAAAAATTGAACTGTTAGGT
AAACTTTCAAAAGGTATTTTTACTTAGGATCCTTAGCATTAAAGCATTTG
GACCACGGTGTTTTTGTTAGTTTTAAAACCCAACTATGGGATAGCCTTGT
AGCATTCTAACCCAGATCTGTTTGTCAGAGCTCTCTGTTTCTGAAAAAAA
ATTTTTTCCACTGCATAGTTCATGCAGCTTTGACTTGAGN
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTCACACAGTTGACCAGG
CATGGTCCCACACATGCCTGTAACCCCAGCATTGAGGGGACAGAGACAGA
AGGATCACTGTGGTTTGATGGCCACCAATGTAGCCAAAAACACAAGCTCC
AGATGAATGGAGAGACCCTGCCTCAAAGGAATAAAGCAGAGAGCGAGACC
CAATGCCCTCCTTCCAAAAAGTCCTTAGAGTCTATGTTGCAATTGACGGT
ATAGCATCAAATGGCTCTCCCACAATGAGTGTTACAGCTTAAAATCCAAC
AGCACTTAATCCTCATGTATATCTGCATGCAATGAGTAGTTTCCATAGCG
AGTCATAGCCCCAGCTTACAGATAGAGAAAGTGAGGCCAGTCCATGTTTC
CACCTATCCCCAGCTGCATACTTGCTCTGTACAGAGACAACACAGCCTGG
TTTGACTGACTCAGCAGACATGCCTCTGCCTGGTCAGAGAAGTCCAGAAC
CCCTGACATGCACACCTTAGAGCTGGCTTATCTGACATGGGTGGAGACTT
CGCTGTCAGCTGATGCCCAGGAAGTGTCACATCATTCTTCAGAGCCTTCC
TGGGCTACTGGCTGGCTCTGTGGCAAGAAGAGAGTGACAAAGAACAGAAA
AACATGGTGCGAGTTACTACTAGTAATAAGTGTTGGTTCATGAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_i12.b1 MSMg01no487_i12.b1 CHROMAT_FILE:
MSMg01no487_i12.b1 PHD_FILE: MSMg01no487_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:10 2005
         (324 letters)



>mm_chr9_59762731_59763454
          Length = 724

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatcatcattcttcaactatgtaggcttatattgattgacaatattaagtttatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatcatcattcttcaactatgtaggcttatattgattgacaatattaagtttatat 260

                                                                       
Query: 61  catgtgatctgtctcgctattccttccggtgtccttgtcattatgaactttagcagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgatctgtctcgctattccttccggtgtccttgtcattatgaactttagcagactc 320

                                                                       
Query: 121 tcttcacaggccataaccattttagcactgtagtatgctttctagtcatcttcattgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcacaggccataaccattttagcactgtagtatgctttctagtcatcttcattgtta 380

                                                                       
Query: 181 cctacttaaatcttaaggaaaaattgaactgttaggtaaactttcaaaaggtatttttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctacttaaatcttaaggaaaaattgaactgttaggtaaactttcaaaaggtatttttac 440

                                                                       
Query: 241 ttaggatccttagcattaaagcatttggaccacggtgtttttgttagttttaaaacccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggatccttagcattaaagcatttggaccacggtgtttttgttagttttaaaacccaa 500

                                   
Query: 301 ctatgggatagccttgtagcattc 324
           ||||||||||||||||||||||||
Sbjct: 501 ctatgggatagccttgtagcattc 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no487_i12.g1 MSMg01no487_i12.g1 CHROMAT_FILE:
MSMg01no487_i12.g1 PHD_FILE: MSMg01no487_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:10 2005
         (645 letters)



>mm_chr9_59945108_59946152
          Length = 1045

 Score = 1193 bits (617), Expect = 0.0
 Identities = 638/645 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctaactcacacagttgaccaggcatggtcccacacatgcctgtaaccccagcattgaggg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ctaactcacacagttgaccaggcatggtcccacacatgcctgtaaccccagcattgaggg 954

                                                                        
Query: 61   gacagagacagaaggatcactgtggtttgatggccaccaatgtagccaaaaacacaagct 120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  gacagcgacagaaggatcactgtggtttgatggccaccaatgtagccaaaaacacaagct 894

                                                                        
Query: 121  ccagatgaatggagagaccctgcctcaaaggaataaagcagagagcgagacccaatgccc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  ccagatgaatggagagaccctgcctcaaaggaataaagcagagagcgagacccaatgccc 834

                                                                        
Query: 181  tccttccaaaaagtccttagagtctatgttgcaattgacggtatagcatcaaatggctct 240
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 833  tccttccaaaaagtccttagagtctatgttgcaattgatggtatagcatcaaatggctct 774

                                                                        
Query: 241  cccacaatgagtgttacagcttaaaatccaacagcacttaatcctcatgtatatctgcat 300
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  cccacaatgagtgttacaacttaaaatccaacagcacttaatcctcatgtatatctgcat 714

                                                                        
Query: 301  gcaatgagtagtttccatagcgagtcatagccccagcttacagatagagaaagtgaggcc 360
            |||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 713  gcaatgagtagtttccatagtgagtcatagccctagtttacagatagagaaagtgaggcc 654

                                                                        
Query: 361  agtccatgtttccacctatccccagctgcatacttgctctgtacagagacaacacagcct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  agtccatgtttccacctatccccagctgcatacttgctctgtacagagacaacacagcct 594

                                                                        
Query: 421  ggtttgactgactcagcagacatgcctctgcctggtcagagaagtccagaacccctgaca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  ggtttgactgactcagcagacatgcctctgcctggtcagagaagtccagaacccctgaca 534

                                                                        
Query: 481  tgcacaccttagagctggcttatctgacatgggtggagacttcgctgtcagctgatgccc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  tgcacaccttagagctggcttatctgacatgggtggagacttcgctgtcagctgatgccc 474

                                                                        
Query: 541  aggaagtgtcacatcattcttcagagccttcctgggctactggctggctctgtggcaaga 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  aggaagtgtcacatcattcttcagagccttcctgggctactggctggctctgtggcaaga 414

                                                         
Query: 601  agagagtgacaaagaacagaaaaacatggtgcgagttactactag 645
            ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 413  agagagtgacaaagaacagaaaaacatggtgtgagttactactag 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)