BAC Information

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BAC

Clone NameMSMg01-487L06
Chromosome9 (Build37)
Map Location 53,722,234 - 53,722,627
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln
Downstream geneLOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487L06.T7 (MSMg01no487_l06.b1)MSMg01-487L06.TJ (MSMg01no487_l06.g1)
ACCAG566602AG566603
length747744
length of high quality
(start - end)
544 (83 - 626)617 (80 - 696)
definitionCHROMAT_FILE: MSMg01no487_l06.b1 PHD_FILE: MSMg01no487_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:23 2005CHROMAT_FILE: MSMg01no487_l06.g1 PHD_FILE: MSMg01no487_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGCCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAAT
CGGCGGAATTCTCTGAAGTTTCCATTGAAGTACCTAAGTCTCTCCTTAGA
TGGAGGCTGTTGAGAGATTGCGGGTGCTTCAGTAGCCTAGCAAAGAACAC
AGAAACTCCCAGAACAACATAATCATAGGGCCCAACTTACTATGATTGTT
TTGAAATTTCATAAATTATATTTGATACTCAAAAAAAAAGCCATGCATAA
TGCCAGCATCTAATAGAATACCTTTTTTGTCCCCCAGAAGAATATTCTTT
GAATAGGATTTTGAAATTTTAAAATGTACATATATTTACTTATGTCCATG
TGTGTGTGTATGTGTGTGTGTGTACATGTGCTATGCATGGCTTTCAAAGG
ACAACTTGTAGGAGTGGGTTTTGTCCCCCCCACCATGTGGGTCCTGGGGT
TCAAACTCAGCTCATCTAGCTTGGCAGCAAAGACCTTTACCTGCTGAGCC
ACCTCACTAGCACACGATATGCTTTAAAGTAAAAACTCAAACTAAACCCC
CAAAATCTTAACAAAACTCAAGTTACCCTCACACACATTTCCCATCTCAC
AACAGTATACGGTGGCAGCTGCCAATACAGAAATGATGCCTTCTTTTTAG
GCAGAAAGTTTTGTTTTGGATCACAGCCTGAGGGTATAGGTTAGAATGGT
AAGGAAGGCAGGTCAAATGGGAGTGGTTCCAGCCGGGCACTCTTGAT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAGTACTGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAGCCCTGAGGTTCCACCTCACACCAGTCAGAATAGCTA
AGATCAAAAACTCAGGAGACAGCAGATGCTGGTGAGGATGTGGAGAAAAA
GGAATACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTAGCGGTTCCTCACTTAATTGGACATAGTACTACTGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGT
AAGGACACATGCTCCACTATGTTCATAGCAGCCACCAAACCCAGACACTA
TTGCATATGCCAGCAAGATTTTGATGAAGGGACCCTGGTATAGCTGTCTT
GTATGAGGCTATGCCAGTGCCTGGCAAACAAAGAAGTGGATGCTCACAGT
CATCTATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGCA
CCCAAGGAGCTGAAGGGGTCTGCATCCCTATAGGTGAAACAACAATATGA
ACTAAGCAGTACTCCCAGAGCTCATGTCTCTAGCTGCGTATGTAGCAGAA
GATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCCATGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_l06.b1 MSMg01no487_l06.b1 CHROMAT_FILE:
MSMg01no487_l06.b1 PHD_FILE: MSMg01no487_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:23 2005
         (544 letters)



>mm_chr9_53722034_53722976
          Length = 943

 Score =  557 bits (288), Expect = e-163
 Identities = 369/416 (88%), Gaps = 36/416 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaagtctctccttagatggaggctgttgagagattgcgggtgcttcagtagcctagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaagtctctccttagatggaggctgttgagagattgcgggtgcttcagtagcctagca 260

                                                                       
Query: 61  aagaacacagaaactcccagaacaacataatcatagggcccaacttactatgattgtttt 120
           ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aagaatacagaaactcccaggacaacataatcatagggtccaacttactatgattgtttt 320

                                                                       
Query: 121 gaaatttcataaattatatttgatactcaaaaaaaaagccatgcataatgccagcatcta 180
           ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gaaatttcatagattatattcgatactcaaaaaaaa-gccatgcataatgccagcatcta 379

                                                                       
Query: 181 atagaatacctttttt----------gtcccccagaagaatattctttgaataggatttt 230
           |||||| |||||||||          |   |||||| |||||||||||||||||||||||
Sbjct: 380 atagaacaccttttttttttttttttg---cccagaggaatattctttgaataggatttt 436

                                                                       
Query: 231 gaaattttaaaatgtacatatatttacttatgtccatgtgtgtgtgtatgtgtgtgtgtg 290
           ||||||||||||| ||||| ||||||||||||||||||||||||||||            
Sbjct: 437 gaaattttaaaatatacatgtatttacttatgtccatgtgtgtgtgta------------ 484

                                                                       
Query: 291 tacatgtgctatgcatggctttcaaaggacaacttgtaggagtgggttttgtccccccc- 349
             ||||||| |||||||||||||||||||||||||||||||||||||||||| ||     
Sbjct: 485 --catgtgccatgcatggctttcaaaggacaacttgtaggagtgggttttgttcc----t 538

                                                                   
Query: 350 ---accatgtgggtcctggggttcaaactcagctcatctagcttggcagcaaagac 402
              |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tataccatgtgggtcctggggttcaaactcagctcatctagcttggcagcaaagac 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)