Query= MSMg01no487_l23.b1 MSMg01no487_l23.b1 CHROMAT_FILE:
MSMg01no487_l23.b1 PHD_FILE: MSMg01no487_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:27 2005
(610 letters)
>mm_chr9_87224940_87225949
Length = 1010
Score = 1036 bits (536), Expect = 0.0
Identities = 593/618 (95%), Gaps = 11/618 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactagctttc-ccagctgggatgactaagggacactgaaattcaactgtgggt 62
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 838 ggaattcactagctttcaacagctgggatgactaagggacactgcaattcaactgtgggt 779
Query: 63 cagcattaatgtactggtcctatgggatgcaaattgaataaaaaggcatcaaaggctctg 122
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagcgttaatgtactggtcctatgggatgcaaattgaataaaaaggcatcaaaggctctg 719
Query: 123 tgactactaacctgataaggtaagcataatgtcac----------cacacacacacacac 172
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 718 tgactactaacctgataaggtaagcataatgtcaccacacacacacacacacacacacac 659
Query: 173 acacacacacacacacacccttaaaatgaggcaggggactggaggaaagatacagaatca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acacacacacacacacacccttaaaatgaggcaggggactggaggaaagatacagaatca 599
Query: 233 aactgaacttctgtagtctcagtggtgctcaggaaagaaggtgagagagcctatcctatc 292
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 598 cactgaacttctgtagactcagaggtgctcaggaaagaaggtgagagagcctatcctatc 539
Query: 293 atcccttaaatcctggagaacccagatttcagcatagaagagagaagataaacttctgaa 352
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 accccttaagtcctggagaacccagatttcagcatagaagagagaagataaacttctgaa 479
Query: 353 agaggagggtaaaagccccacatagatttagaaatgttagcgtttgctggaaaacaaaac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agaggagggtaaaagccccacatagatttagaaatgttagcgtttgctggaaaacaaaac 419
Query: 413 aactagtcaaccatttgcagtgcaggctcactaagaagccctagatcccaaattgtggtc 472
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agctagtcgaccatttgcagtgcaggctcactaagaagccctagatcccaaattgtggtc 359
Query: 473 ttcatcatgtctttcttataagacatcagggcttcgcaaagaaatggctaactccagacc 532
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 358 ttcatcatgtctttctaataagacaccatggcttcgcaaagaaatggctaactccagacc 299
Query: 533 tgtaatttaaaaaaatgctcatgataatttgaaatattttggcacaaattcaagggtagg 592
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtaatttaaaaaaatgctcacgataatttgaaatattttggcacaaattcaagggtagg 239
Query: 593 ggaatcattctgtgtgaa 610
||||||||||||||||||
Sbjct: 238 ggaatcattctgtgtgaa 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_l23.g1 MSMg01no487_l23.g1 CHROMAT_FILE:
MSMg01no487_l23.g1 PHD_FILE: MSMg01no487_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:27 2005
(566 letters)
>mm_chr9_87026213_87027178
Length = 966
Score = 977 bits (505), Expect = 0.0
Identities = 552/573 (96%), Gaps = 13/573 (2%)
Strand = Plus / Plus
Query: 1 acagatcccaggtttatccattaaaagcaatccaagacagttc-ggtgagcatagctcaa 59
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 201 acagatcccaggtttatccattaaaagcaatccaagacagt-ctggtgagcatagctcaa 259
Query: 60 gttttctgggaacctctccacaacagcaatgccatttgtccttcagctggaatctgttac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttttctgggaacctctccacaacagcaatgccatttgtccttcagctggaatctgttac 319
Query: 120 cagcatcgtgacacagagattaaagcaggttgtcctggtcttggttacttacatctctgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagcatcgtgacacagagattaaagcaggttgtcctggtcttggttacttacatctctgt 379
Query: 180 ttctgtgataaaacaccatgaccaaaggaa-cttataaaatgaagtgtttaatttgggac 238
||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct: 380 ttctgtgataaaacaccatgaccaa-ggaaacttataaaacgaagtgtttaatttgggac 438
Query: 239 tcactgttctagagggtaagtccatgaccatcatggtagggcacatggcagcaggcaggc 298
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 ttactgttctagagggtaagtccatgaccatcatggtaggacacatggcagcaggcaggc 498
Query: 299 aaacatgacagggggagcaatagctaaaagctcacatcttgagacacaactgcgcatgag 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 aaacatgacagggggagcaatagctaaaagctcacatcttgagacacaactgtgcatgag 558
Query: 359 gcagagaaagacatactaaacctcacatcgaaaccccagtgatgcacctcc--------- 409
|| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctgagaaaggcatactaaacctcacatcgaaaccccagtgatgcacctccaccaacaag 618
Query: 410 gccacacctcctaatccttcccaaacagttccactaaccagggagcaagtattcaaatat 469
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 gccacacctcctaatccttcccaaacagttccaccaaccagggagcaagtattcaaatat 678
Query: 470 atgagcctacaagatcaatcccattcaaaccaccacatcatgttttgcttgatttccctt 529
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 679 atgagcctacaagatcaatcccattcaaaccaccatatcatgttttgcttgatttccctt 738
Query: 530 aaaacaaagctctggggtctccaaacagccaga 562
|||||||||||||||||||||||||||||||||
Sbjct: 739 aaaacaaagctctggggtctccaaacagccaga 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
