BAC Information

Click to search

BAC

Clone NameMSMg01-488C02
Chromosome9 (Build37)
Map Location 94,333,273 - 94,488,949
singlet/doubletdoublet
Overlap gene1190002N15Rik, EG667601
Upstream geneLOC674371, LOC384967, EG384968
Downstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488C02.T7 (MSMg01no488_c02.b1)MSMg01-488C02.TJ (MSMg01no488_c02.g1)
ACCAG566927AG566928
length757759
length of high quality
(start - end)
382 (114 - 495)433 (177 - 609)
definitionCHROMAT_FILE: MSMg01no488_c02.b1 PHD_FILE: MSMg01no488_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:57 2005CHROMAT_FILE: MSMg01no488_c02.g1 PHD_FILE: MSMg01no488_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,488,568 - 94,488,949)(94,333,273 - 94,333,705)
sequence
CTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCACTTTCCTTCAGCTTTCGTGAAGGAACTTCTATTCCCATGAG
AAAGCACTTCACAACATTAGATTAAAAAAGAAAGAAGAAAAATGAAACCC
ATTATAGCAATGGCTTCTCTCTTCAGTTTTGATCTTCCTTCAATTTGTAA
AATGCACACCAAAGACCATTAGGGAACATAATTTGAATCGCTTCACTCTA
AAATTAAAGTGTTGAAAGGGGGAAAAAATACTGCAGCAAAATGAAAACCA
GCCTTGTCTCATTTTCTAATACCTGAATTTATTATAACTTTCGTTTTTGG
ATTTGTATAGAGTACTTCCCACAGACTGAAATTCCACATATAGATTCTCT
GAAAAGGAATATGCATAAACTATTACTTAAAATGCCATGTTATTTTCTTT
CTGGCTGTTGTTTAATGTTACCTTGCATCCGTCTATCCACACAGACTCAG
TACAATGGCTGGGTAACACTTGATATGCATGATCAGCATTGAAATGGCCT
CACTAGCCTCATAGGGTAGGTATTTCTCTTTCCATTTCATAATTGTAAAA
ATGGAGGTTCAGAAAGTTTAACTTCTGCCAGTCATATAGTCAATAAGTGA
CTATTAGGAGCTAAACTATATTCCCTCAGAATTTATATACTGACAACAGC
AACCCTAGTCCCTCAAGTGGTAAATGTGTTTGAAGATAATGAAATAGGGA
GACTGGT
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACCCTTGAATGATTCCTGACTG
CAGCCAAAGTGCCCATGTTCCCACTCACAGATGACAACTGCCGAACAAGT
CAGCTTATGGAAGGCAGCAACTGAAGAGCATTAAATGCAGTCCTGCACTG
GTGTCACAAACTGAAAATTATAGCTTTAAAGAAACATTCAAAAATATTCT
CATTCGAGAACAAACAACATAATTAACACATGAACAAATGTCTTGAATAA
GTATCTCCCCAAAGAAGAAAATATATACAAATTAAGCCCATGAATTAATA
GTTAACTTTACTAACAAAATGAAAATCAAAACCACATTGAAGTGGCACCC
CATGCCCACTTGGACGATTACTATCAAAGTAAATAATAGAAAACAGCAAA
TATTGATAAATACATGCTGCTTAAACTTGACAGTTGTAACTGTCAAGGTA
ACCACACCTAGGGTCATCCTAGACAGGAGTATCAATCAGGGATTGTCTAG
ATCAAATTGGCCTGTAGGCATGTCTCCTTGGAATTGTTTTGATTATTCAC
TGAAGTAGGAGGAGGAGATACTCTGAATATGAGCAAAACCTTCTCATTGG
CTGGACCCTGAACTATTAAAAAAAAAAAGACCAAACTAACAAACAAAGAA
NAAACCGAAGAAATCTAGCTGAGCATATACATATGCCCGAAGCAAATGAG
AATGTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_c02.b1 MSMg01no488_c02.b1 CHROMAT_FILE:
MSMg01no488_c02.b1 PHD_FILE: MSMg01no488_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:57 2005
         (382 letters)



>mm_chr9_94488368_94489149
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattagattaaaaaagaaagaagaaaaatgaaacccattatagcaatggcttctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acattagattaaaaaagaaagaagaaaaatgaaacccattatagcaatggcttctctctt 523

                                                                       
Query: 61  cagttttgatcttccttcaatttgtaaaatgcacaccaaagaccattagggaacataatt 120
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgttttgttcttccttcaatttgtaaaatgcacaccaaagaccattagggaacataatt 463

                                                                       
Query: 121 tgaatcgcttcactctaaaattaaagtgttgaaagggggaaaaaatactgcagcaaaatg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 tgaatcgcttcactctaaaattaaagtgttgaaaggggaaaaaaatactgcagcaaaatg 403

                                                                       
Query: 181 aaaaccagccttgtctcattttctaatacctgaatttattataactttcgtttttggatt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 402 aaaaccagccttgtctcattttctaatacctgaacttattataactttcgtttttggatt 343

                                                                       
Query: 241 tgtatagagtacttcccacagactgaaattccacatatagattctctgaaaaggaatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgtatagagtacttcccacagactgaaattccacatatagattctctgaaaaggaatatg 283

                                                                       
Query: 301 cataaactattacttaaaatgccatgttattttctttctggctgttgtttaatgttacct 360
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| 
Sbjct: 282 cataaactattacttaaaatgccatgttcttttctttcttgctgttgtttaatgttaccc 223

                                 
Query: 361 tgcatccgtctatccacacaga 382
           |||||| |||||||||||||||
Sbjct: 222 tgcatctgtctatccacacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no488_c02.g1 MSMg01no488_c02.g1 CHROMAT_FILE:
MSMg01no488_c02.g1 PHD_FILE: MSMg01no488_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:57 2005
         (433 letters)



>mm_chr9_94333073_94333905
          Length = 833

 Score =  775 bits (401), Expect = 0.0
 Identities = 425/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattaaatgcagtcctgcactggtgtcacaaactgaaaattatagctttaaagaaaca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcattaaatgcagtccggcactggtgtcacaaactgaaaattatagctttaaagaaaca 260

                                                                       
Query: 61  ttcaaaaatattctcattcgagaacaaacaacataattaacacatgaacaaatgtcttga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaaaatattctcattcaagaacaaacaacataattaacacatgaacaaatgtcttga 320

                                                                       
Query: 121 ataagtatctccccaaagaagaaaatatatacaaattaagcccatgaattaatagttaac 180
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 321 ataagtatctccccaaagaagaaaatagataccaattaagcccatgaattaatagttaac 380

                                                                       
Query: 181 tttactaacaaaatgaaaatcaaaaccacattgaagtggcaccccatgcccacttggacg 240
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tttgctaacaaaatgaaaatcaaaaccatattgaagtggcaccccatgcccacttggacg 440

                                                                       
Query: 241 attactatcaaagtaaataatagaaaacagcaaatattgataaatacatgctgcttaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attactatcaaagtaaataatagaaaacagcaaatattgataaatacatgctgcttaaac 500

                                                                       
Query: 301 ttgacagttgtaactgtcaaggtaaccacacctagggtcatcctagacaggagtatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgacagttgtaactgtcaaggtaaccacacctagggtcatcctagacaggagtatcaat 560

                                                                       
Query: 361 cagggattgtctagatcaaattggcctgtaggcatgtctccttggaattgttttgattat 420
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 561 cagggattgtctagatcaaattggcctgtaggcatgtctgtttggaattgttttgattat 620

                        
Query: 421 tcactgaagtagg 433
           |||||||||||||
Sbjct: 621 tcactgaagtagg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)