Query= MSMg01no488_d16.b1 MSMg01no488_d16.b1 CHROMAT_FILE:
MSMg01no488_d16.b1 PHD_FILE: MSMg01no488_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:05 2005
(676 letters)
>mm_chr9_123283455_123284530
Length = 1076
Score = 1216 bits (629), Expect = 0.0
Identities = 666/687 (96%), Gaps = 17/687 (2%)
Strand = Plus / Plus
Query: 5 gaattcctg--ctttcttatgtaattatgaaaatttccctttcaggcagattcctactca 62
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcctgcactt--ttatgtaattatgaaaatttccctttcaggcagattcctactca 253
Query: 63 attataacacaaactcctgtcatttcttctctttccacctccagatgatggaactcattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attataacacaaactcctgtcatttcttctctttccacctccagatgatggaactcattt 313
Query: 123 cattgtcacagaggaaaatg---------acacagaaaagcacaaggcagggacaggcag 173
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 cattgtcacagaggaaaatgacttaatttacacagaaaagcacaaggcagggacaggcag 373
Query: 174 taggctgaatgtatttctgcaaaaacagaaatgtttgtgaatattgaagactcactagca 233
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 374 taggctgaatgtatttctgcaaaaccagaaatgtttgtgaatattgaagactcactagca 433
Query: 234 ttgcttttctgtatgtctctgtaaactcagggttggaggttagctgtgctagtccatgat 293
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 ttgcttttctgtatgtctctgtaaactcagggttggaggttagttgtgctagtccatgat 493
Query: 294 tatttgatgttgtcattaatttacttttcattgcacaaacacacaaaacagaagaggcta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatttgatgttgtcattaatttacttttcattgcacaaacacacaaaacagaagaggcta 553
Query: 354 ctgcgaaagctgtatgtagaaaatgcttggacaagattgttaattaatatgatataataa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctgcgaaagctgtatgtagaaaatgcttggacaagattgttaattaatatgatataataa 613
Query: 414 atagcacaagaagataggatgattatagtagaagaaaattgttttacataataacttgaa 473
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 614 atagcacaagaagatagggtgattataatagaagaaaattgttttacataataacttgaa 673
Query: 474 agtcaaaaactagaaatagaccaggtgtggtataggcctgaagtcccagcactcaagagg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agtcaaaaactagaaatagaccaggtgtggtataggcctgaagtcccagcactcaagagg 733
Query: 534 ccttaggccagcctgggctacaaagcaagacccagtctcagaaagaaaaacaaacaaaca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccttaggccagcctgggctacaaagcaagacccagtctcagaaagaaaaacaaacaaaca 793
Query: 594 cacacacacacacacacacacacacacacacacacac----acacacacaaacaaaccca 649
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 794 cacacacacacacacacacacacacacacacacacacctacacacacacaaacaaaccca 853
Query: 650 caaatatatatgtcaaggatttttatt 676
|||||||||||||||||||||||||||
Sbjct: 854 caaatatatatgtcaaggatttttatt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_d16.g1 MSMg01no488_d16.g1 CHROMAT_FILE:
MSMg01no488_d16.g1 PHD_FILE: MSMg01no488_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:05 2005
(612 letters)
>mm_chr9_123421305_123422316
Length = 1012
Score = 1015 bits (525), Expect = 0.0
Identities = 582/619 (94%), Gaps = 29/619 (4%)
Strand = Plus / Minus
Query: 1 caagattcgcttgcttctgcctcccaagtgctggcattaaaggcatgcaccaccaccacc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 caagattcgtttgcttctgcctcccaagtgctggcattaaaggcatgcaccaccaccacc 591
Query: 61 cagctcatatttttaagtgaggaaagggatatctgaaaaagtctaggttctacagttcca 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 590 cagctcatatttttaagtgaggaaagggatatctgaaagagtctaggttctacagttcca 531
Query: 121 tctgtgtgatattgtgaaaccagcaaacatagtgtggcaatggagccaggagcagctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctgtgtgatattgtgaaaccagcaaacatagtgtggcaatggagccaggagcagctgtg 471
Query: 181 gcctctgtggagaaggatctcaagtgggaggaagcaaaggggctttttctgggcttcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gcctctgtggagaaggatctcaagtgggaggaagcaaaggggctttttctgggcttcagc 411
Query: 241 aatgtcttgcgttttaattttggatgtgatgggtaggtgcacaggaaaatttcactcatc 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 410 aatgtcttgcgttttaattttggatgtgatgggtaagtgcacaggaaaatttcactcatc 351
Query: 301 agtaagacttgtgccttttattctgagttatttcttaacaaaaagatgaaagaaaataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtaagacttgtgccttttattctgagttatttcttaacaaaaagatgaaagaaaataat 291
Query: 361 aaaaatgatggtgattggtag-------ctccagaatgaagtcactgcattccacaaatg 413
||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct: 290 aaaaatgatggtgattggtagctcccttctccagaatgaaatcactgcattccacaaacg 231
Query: 414 gaatgaatgttcccagctaaccattttctatgactgacatattaaggactttttgttttc 473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gaatgaatgtttccagctaaccattttctatgactgacatattaaggactttttgttttc 171
Query: 474 ttgttgctaccactgggattaaactcagagccttgggcatgctctgcaagcgatgggcca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgttgctaccactgggattaaactcagagccttgggcatgctctgcaagcgatgggcca 111
Query: 534 ctgcgcttcttcccaggacaagaaaggagcttcctataagctactgaatactcctcagag 593
||| |||||||||||||||||||||||||||||||||||
Sbjct: 110 ctg----------------------ggagcttcctataagctactgaatactcctcagag 73
Query: 594 gaactctccactcgctcag 612
|||| |||||||| |||||
Sbjct: 72 gaaccctccactcactcag 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
