BAC Information

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BAC

Clone NameMSMg01-488I06
Chromosome9 (Build37)
Map Location 103,820,453 - 103,821,101
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978
Downstream geneNphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I06.T7 (MSMg01no488_i06.b1)MSMg01-488I06.TJ (MSMg01no488_i06.g1)
ACCAG567220AG567221
length756746
length of high quality
(start - end)
649 (82 - 730)420 (327 - 746)
definitionCHROMAT_FILE: MSMg01no488_i06.b1 PHD_FILE: MSMg01no488_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005CHROMAT_FILE: MSMg01no488_i06.g1 PHD_FILE: MSMg01no488_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGAGC
CGCGGAANTCAAATTCTACTAAAAAGAGACTTTATTCAGGGAAGCTAACT
GTATAACAATAATCCTTCATGTCTTTATTGAATTGTCTTCAAACAGCTAC
ATTACTTGATTAAAACCATGTTTAAAACAATGACCCCTCCCAGACACGTC
TGGGTTTGTATCAAGCGGACAAAGAACAACTGGGTTGGGGTGGGAGGTGG
GGTGCCACTAAAAGGAAAATCCCTTTGGCCAATCAAATGAGGTATAAAGT
ACAACCGAAAACAAAAATTACTATATTTGGCAGTTGCCAAAGGCAGGTTC
TGCCAGCTCCAACTCACAAGGGGTCTGGCAGCATTTGTAGAAAGACGGAG
GCAAACGGTAGAAGACAACTTAACTGGCTAAAGTCTAGCCAACTAGTCAA
TTGCTTAACTAGTTGTTCACCGCATAATTAGCTAGTTATACTGCCTCCTG
AAGACCAACAAAGTTCAGTTCCTAGGACTGAACTCTCTGTTGGTTCAGTC
TGTGGGGTCTAGGGCATGTTCCAAGTCCAAGTGCAGAGCTTTCCTTCCAT
CAAATAGTAGCTAGCACTACTGTCCCGGTTGGGTTTTCTATTGCAGTTAT
AAAACACCATGACCAAAAGCAACTTGTGAGGGAAAGAGTTTGTTTCTGCT
TCTAGTTCCACATCACAGTTCATCATAGAAAGGAAGTCGGGCAAGAACTG
AAGCAA
CCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGCTCAAAAAAATTCTATCCCAGGTGGTTCCTGTTAGA
CCTTCTGTGTTTGCATTCCTCTGTTTTATGTAAGATTCCAGTTATCTCAT
TTGTACCTTGTGAATATGTCACCCAACTTCCTTATTGTCCTCTGCATAAA
AAGTCTGATACTCGATTTGAAAAATACATTCAGATTCCACATGACCTCTC
CTGTGTGTGTGTGTCTGTCTGTCAATTCATCCTACACTTTGTCCACTCGA
GACTAGAGACCCGTTCCATATTTATTAAGGGGCCCAGAGGGTCTGCGGCA
AGATTTCCCACTCAGTTTTTTTGTTTGTTTGTTTTGTTTGGAATGTTTCT
GTTAACCTTTTGGTTTCACATAAAATTTAGAAGCAGGTTTTTTTCAAATT
AAAGAAAAAAACCAGAATTTTGATTGACATTGCTTTGAATCTATAGATCA
GTTGGGACAAAGAGCAAAATTTTTCAATCCTGACTTTTCCTGCTCATGTA
TGTGACTTCTAAGGTTCTTTAAAAACTGCTAATGAGGTTTTTTTTCATGT
TCTATACAAAGGTCTTGAACACCTTCTATTAGGTAATGTTTTGGGATGTT
TTTATTAGAGCTTTTGGGTGTCATTTTTCAACTGTTGCTAAGATATAGAA
ATGCAAGTGATTTGTACTCTTAAGTTTAACAAACTATTACCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i06.b1 MSMg01no488_i06.b1 CHROMAT_FILE:
MSMg01no488_i06.b1 PHD_FILE: MSMg01no488_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:28 2005
         (649 letters)



>mm_chr9_103820253_103821301
          Length = 1049

 Score = 1193 bits (617), Expect = 0.0
 Identities = 641/649 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcagggaagctaactgtataacaataatccttcatgtctttattgaattgtcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcagggaagctaactgtataacaataatccttcatgtctttattgaattgtcttca 260

                                                                       
Query: 61  aacagctacattacttgattaaaaccatgtttaaaacaatgacccctcccagacacgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagctacattacttgattaaaaccatgtttaaaacaatgacccctcccagacacgtct 320

                                                                       
Query: 121 gggtttgtatcaagcggacaaagaacaactgggttggggtgggaggtggggtgccactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtttgtatcaagcggacaaagaacaactgggttggggtgggaggtggggtgccactaa 380

                                                                       
Query: 181 aaggaaaatccctttggccaatcaaatgaggtataaagtacaaccgaaaacaaaaattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaaaatccctttggccaatcaaatgaggtataaagtacaaccgaaaacaaaaattac 440

                                                                       
Query: 241 tatatttggcagttgccaaaggcaggttctgccagctccaactcacaaggggtctggcag 300
            | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaattggcagttgccaaaggcaggttctgccagctccaactcacaaggggtctggcag 500

                                                                       
Query: 301 catttgtagaaagacggaggcaaacggtagaagacaacttaactggctaaagtctagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttgtagaaagacggaggcaaacggtagaagacaacttaactggctaaagtctagcca 560

                                                                       
Query: 361 actagtcaattgcttaactagttgttcaccgcataattagctagttatactgcctcctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagtcaattgcttaactagttgttcaccgcataattagctagttatactgcctcctga 620

                                                                       
Query: 421 agaccaacaaagttcagttcctaggactgaactctctgttggttcagtctgtggggtcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaccaacaaagttcagttcctaggactgaactctctgttggttcagtctgtggggtcta 680

                                                                       
Query: 481 gggcatgttccaagtccaagtgcagagctttccttccatcaaatagtagctagcactact 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gggcatgttccaagtccaagtgcagagctttccttccatcaaatagtagctaacactact 740

                                                                       
Query: 541 gtcccggttgggttttctattgcagttataaaacaccatgaccaaaagcaacttgtgagg 600
           ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 741 gtctcagttgggttttctattgcagctataaaacaccatgaccaaaagcaacttgtgggg 800

                                                            
Query: 601 gaaagagtttgtttctgcttctagttccacatcacagttcatcatagaa 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaagagtttgtttctgcttctagttccacatcacagttcatcatagaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)