Query= MSMg01no488_m07.b1 MSMg01no488_m07.b1 CHROMAT_FILE:
MSMg01no488_m07.b1 PHD_FILE: MSMg01no488_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(281 letters)
>mm_chr9_21387187_21387867
Length = 681
Score = 485 bits (251), Expect = e-142
Identities = 268/281 (95%), Gaps = 12/281 (4%)
Strand = Plus / Minus
Query: 1 agtgaagggtgcgaggtggacatcaccaatggtggggaacatgtttcctggaattggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agtgaagggtgcgaggtggacatcaccaatggtggggaacatgtttcctggaattggaag 284
Query: 61 cagaagagtgctgttgtcaggacagtacatcctgcaaggctgtgtagaacttttagagga 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 283 cagaagagtgctgttgtcaggacagtacatcctgtaaggctgtgtagaacttttagagga 224
Query: 121 ccttgagatctccaatcatggacccatccatccactcatccacacaccacccacccaccc 180
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 223 ccttgagatctccaatcatggac------------tcatccacacaccacccacccaccc 176
Query: 181 atccatgcacacatccatccatgcacccatccatccatccacccaccacgtacccatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atccatgcacacatccatccatgcacccatccatccatccacccaccacgtacccatcca 116
Query: 241 ttcatgctatagtgtgcatgttgtttgtccatggcctctta 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttcatgctatagtgtgcatgttgtttgtccatggcctctta 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no488_m07.g1 MSMg01no488_m07.g1 CHROMAT_FILE:
MSMg01no488_m07.g1 PHD_FILE: MSMg01no488_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(347 letters)
>mm_chr9_21235961_21236707
Length = 747
Score = 671 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Plus
Query: 1 ttgggcctaatggaccaggtgctggagacttgacagggacccagaactaactagacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggcctaatggaccaggtgctggagacttgacagggacccagaactaactagacagaa 260
Query: 61 aaatgggtgggcaggtaactaaacaacattctggaagaatgagaaatctggtgatagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgggtgggcaggtaactaaacaacattctggaagaatgagaaatctggtgatagata 320
Query: 121 gcatggagtcagaagtgagactggttttagcatccactgtcacatggctgcccctcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatggagtcagaagtgagactggttttagcatccactgtcacatggctgcccctcagtt 380
Query: 181 gaactggagactggtgggacagaacagtatccacacagaaggaccaacaggtagagtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactggagactggtgggacagaacagtatccacacagaaggaccaacaggtagagtgcc 440
Query: 241 ctgcacatacctggttagctgatggcccgatgcagatttggcatagcctgggatacatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcacatacctggttagctgatggcccgatgcagatttggcatagcctgggatacatgg 500
Query: 301 ggctcaggacagtacctgtcagtttttaattacaagagcagagtggg 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctcaggacagtacctgtcagtttttaattacaagagcagagtggg 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
