Query= MSMg01no488_m20.b1 MSMg01no488_m20.b1 CHROMAT_FILE:
MSMg01no488_m20.b1 PHD_FILE: MSMg01no488_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(650 letters)
>mm_chr9_48651642_48652691
Length = 1050
Score = 880 bits (455), Expect = 0.0
Identities = 469/479 (97%), Gaps = 10/479 (2%)
Strand = Plus / Minus
Query: 177 cacaggtgctggtactcaaacttcagccatctgcaagaacagcatctattcttggctgct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 cacaggtgctggtactcaaacttcagccatctgcaagaacagcatctattcttggctgct 991
Query: 237 aaa-----ttttttctctctagcctctgaaaaggtttgcttgtttctaaagataatctct 291
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aaaccaac-----tctctctagcctctgaaaaggtttgcttgtttctaaagataatctct 936
Query: 292 tatagtccaggctggccttgaacacctaatcgtccaaactctggtttcccagtactggga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tatagtccaggctggccttgaacacctaatcgtccaaactctggtttcccagtactggga 876
Query: 352 attacaggtgtgttccctcatgctccacacttctccattcacccggcacacagctctcat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 attacaggtgtgttccctcatgctccacacttctccattcacccggcacacagctctcat 816
Query: 412 ggcatgctgacaggctgagcctctctgctacgctaagagaacacttgcatgctagcttcc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ggcatgctgacaggctgagcctctctgctacgctaagagaacacttgcatgctagcttcc 756
Query: 472 ctgtgaagagaagccgactgggcacagtgggcagatgggagccagtagcttcttgcagac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctgtgaagagaagccgactgggcacagtgggcagatgggagccagtagcttcttgcagac 696
Query: 532 cccctggtcctatgagcataaagctaaaggttaataataatcacaacaggcaggcagcct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cccctggtcctatgagcataaagctaaaggttaataataatcacaacaggcaggcagcct 636
Query: 592 atcactgcctccctgtctggctgagaggtttacaacttaaactcacggcaaaggaagaa 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atcactgcctccctgtctggctgagaggtttacaacttaaactcacggcaaaggaagaa 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m20.g1 MSMg01no488_m20.g1 CHROMAT_FILE:
MSMg01no488_m20.g1 PHD_FILE: MSMg01no488_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:49 2005
(680 letters)
>mm_chr9_48581468_48582546
Length = 1079
Score = 1299 bits (672), Expect = 0.0
Identities = 678/680 (99%), Gaps = 1/680 (0%)
Strand = Plus / Plus
Query: 1 cagaatacctccgttctagatcttgtttgggaggggcatgggggtagaggtgcagaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatacctccgttctagatcttgtttgggaggggcatgggggtagaggtgcagaggga 260
Query: 61 ggcaaaaggaaagaccgggtaagagatgtgtgtgatacatctaaaaacaccatttcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaaaggaaagaccgggtaagagatgtgtgtgatacatctaaaaacaccatttcaagc 320
Query: 121 cacagccatttcagtcaccacagccaccagatcctatattcttctcaagatacctggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagccatttcagtcaccacagccaccagatcctatattcttctcaagatacctggtga 380
Query: 181 cacgaacaacttacagaaataaagatggctccttgtttccaagtgttgctctgaccccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgaacaacttacagaaataaagatggctccttgtttccaagtgttgctctgaccccaa 440
Query: 241 gatgtcttcggttgtagtacaaccttgcatcacgcgcacagagcctggttaattgagcta 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtca-cggttgtagtacaaccttgcatcacgcgcacagagcctggttaattgagcta 499
Query: 301 acaccacaccgtgtcctacacgtcacaagaaggatgggctggacttggttccccatcacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaccacaccgtgtcctacacgtcacaagaaggatgggctggacttggttccccatcacc 559
Query: 361 ccgagcatctccccagagcaaagtgaccccaaggacagactgcatctgctgatcccctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccgagcatctccccagagcaaagtgaccccaaggacagactgcatctgctgatcccctgt 619
Query: 421 tgagattattcatatgttttgattcctaattcagaaataataagtggttcatggcttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgagattattcatatgttttgattcctaattcagaaataataagtggttcatggcttcca 679
Query: 481 agtttaaaaatatattcatcatctggtctctgtcacagcacgtaatccactggcacagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtttaaaaatatattcatcatctggtctctgtcacagcacgtaatccactggcacagga 739
Query: 541 atgtatgccacaggaggctccctggaacgacccggtgcccatattcccacttagctagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgtatgccacaggaggctccctggaacgacccggtgcccatattcccacttagctagtg 799
Query: 601 gtgacaagagtctggggtccctagttcctcccttcctccttcctccccccatctctctgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtgacaagagtctggggtccctagttcctcccttcctccttcctccccccatctctctgt 859
Query: 661 ccccctttctctcatttcat 680
||||||||||||||||||||
Sbjct: 860 ccccctttctctcatttcat 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
