BAC Information

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BAC

Clone NameMSMg01-488O13
Chromosome9 (Build37)
Map Location 47,557,319 - 47,731,183
singlet/doubletdoublet
Overlap geneCadm1
Upstream gene2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488O13.T7 (MSMg01no488_o13.b1)MSMg01-488O13.TJ (MSMg01no488_o13.g1)
ACCAG567520AG567521
length722749
length of high quality
(start - end)		567 (65 - 631)622 (76 - 697)
definitionCHROMAT_FILE: MSMg01no488_o13.b1 PHD_FILE: MSMg01no488_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:57 2005CHROMAT_FILE: MSMg01no488_o13.g1 PHD_FILE: MSMg01no488_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,557,319 - 47,557,885)(47,730,781 - 47,731,183)
sequence
GCGGCCGCTAAACGACTCACAATCAGTACGGAGGCGCGGAATTCTTCATT
TCAAACAACGAGAGACCACATTCCTAGGTAAATAAGCTCCTTGATAAAGC
CACATCTTGCTAGAAAATATCCCTTCTTGACACCTTCCTGCCTGCCAGCC
TGGTCACAGTGTGCTACCCACTCAGAACAGGCTGCCTCTTCTAGTTGAGA
TAGGGGTGGTGCGGTGCAGATCTGTGAGGATCTGATTCTTGGAGGCTATG
AGAGGCCTGCTTTGATAAGTATGAATGAGTGTCCGTGTATTAAGCATGGT
ATGTTTTTTTTTTTTTTCCCCATCTCTGTGCCGACAGGGACTATATTCCC
TATCAGAGTAAAGTTTGTTCTGTGAGGCTGATGATTCACCCCCTGTTTCG
CCCCTTTTCCTGCCTTCTCATCCAGTGGTTGCATTATGTACGAATTCTAG
CAGTTTTCTTCGTTTCAAGTAAAGCTCTTCTGAGATGCGAACAATAAAAA
TCATATTTTTATAAGCCTTCTTGGAAGAAGACCGTGCGAATTCCATTTTA
GTGGAAAAGGACATTCCATTTTTTGATCATGTTAATGTCTACTCCCAAGC
AGTGCTGGGAGGGTGGGTGACCACCTGCACAGAATCTCATAAAAAGTGGC
CTATATGTTCCCATAGTCTTGATATGCATGACTCCTGTGCCCACTACCCC
ATCTCAGTTGCTTCTCTTGTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACACGCGAGAGTCTACACTCAGTCACTCAGACATCTA
TTCAGGAAACACTTATTCTTTGTGAGATGTTGAGAATAATAACAAGCACT
ATTAATAGCTAATATTTTTGAGTGCCTGCCACCATTTTAAGCACTAGGTG
AAAATTAATGTATTTTCCTCCCCAGGAACCCTAGGGTAGGCGCTATGGTG
ACTGTCATTTTTCTAGATGAGGGAAGCCAGACACAGAGAGGTTGGTTATC
CTGCCCAAGGACCCACACTTGATGATTCCCGTCCATCAGCAGGTGTCATG
AGTCAGCACTGTGGATCCCAGATTTTCCCACACCATCGCAAGTGCTGAGG
AGATGATGTGTTGAATAAAGCATTGTTATCCTGCCCGTGAGATGCTCACA
ATGCAGAGAAGGAAACATTTGTGTAAACAAATAAAGAAAACTCAAGAGAT
GATATAATGTGTCCAGAGAGAAGCATAAACAAGTATCAGTGGGGTGCTAG
GGAGGGGGGAGCCGTGCTGGCTAAGCACTGTGCAGGGTGAAGGATTCAGG
CTGGACAGGAGGTCTGGGGACTCCTCTACACAGCCAGCAGTCCAGGTGAG
CGGGATCGCTCCAGGTTCGATTGTCTAATAGGATCATTGCATAACCCTCA
AAGGGTTACTAATGACCTCACGGATATGCCAATCCAGCCTCTTAGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_o13.b1 MSMg01no488_o13.b1 CHROMAT_FILE:
MSMg01no488_o13.b1 PHD_FILE: MSMg01no488_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:57 2005
         (567 letters)



>mm_chr9_47557119_47558085
          Length = 967

 Score = 1050 bits (543), Expect = 0.0
 Identities = 561/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacattcctaggtaaataagctccttgataaagccacatcttgctagaaaatatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacattcctaggtaaataagctccttgataaagccacatcttgctagaaaatatccct 260

                                                                       
Query: 61  tcttgacaccttcctgcctgccagcctggtcacagtgtgctacccactcagaacaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgacaccttcctgcctgccagcctggtcacagtgtgctacccactcagaacaggctg 320

                                                                       
Query: 121 cctcttctagttgagataggggtggtgcggtgcagatctgtgaggatctgattcttggag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 321 cctcttctagttgagataggggtggtgcggtgcagatctgtgaggatctgagccttggag 380

                                                                       
Query: 181 gctatgagaggcctgctttgataagtatgaatgagtgtccgtgtattaagcatggtatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gctatgagaggcctgctttgataagtatgaatgagtgtccgtgtattaagcatggtatgc 440

                                                                       
Query: 241 tttttttttttttccccatctctgtgccgacagggactatattccctatcagagtaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttttttttccccatctctgtgccgacagggactatattccctatcagagtaaagt 500

                                                                       
Query: 301 ttgttctgtgaggctgatgattcaccccctgtttcgccccttttcctgccttctcatcca 360
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 501 ttgttctgtgaggctgatgattcaccccctgtttcgtttcttttcctgccttctcatcca 560

                                                                       
Query: 361 gtggttgcattatgtacgaattctagcagttttcttcgtttcaagtaaagctcttctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggttgcattatgtacgaattctagcagttttcttcgtttcaagtaaagctcttctgag 620

                                                                       
Query: 421 atgcgaacaataaaaatcatatttttataagccttcttggaagaagaccgtgcgaattcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcgaacaataaaaatcatatttttataagccttcttggaagaagaccgtgcgaattcc 680

                                                                       
Query: 481 attttagtggaaaaggacattccattttttgatcatgttaatgtctactcccaagcagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attttagtggaaaaggacattccattttttgatcatgttaatgtctactcccaagcagtg 740

                                      
Query: 541 ctgggagggtgggtgaccacctgcaca 567
           |||||||||||||||||||||||||||
Sbjct: 741 ctgggagggtgggtgaccacctgcaca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_o13.g1 MSMg01no488_o13.g1 CHROMAT_FILE:
MSMg01no488_o13.g1 PHD_FILE: MSMg01no488_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:57 2005
         (622 letters)



>mm_chr9_47730162_47731183
          Length = 1022

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Minus

                                                                        
Query: 220  gttatcctgcccaaggacccacacttgatgattcccgtccatcagcaggtgtcatgagtc 279
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1022 gttatcctgcccaaggacccacacttgaggattcccgtccatcagcaggtgtcatgagtc 963

                                                                        
Query: 280  agcactgtggatcccagattttcccacaccatcgcaagtgctgaggagatgatgtgttga 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  agcactgtggatcccagattttcccacaccatcgcaagtgctgaggagatgatgtgttga 903

                                                                        
Query: 340  ataaagcattgttatcctgcccgtgagatgctcacaatgcagagaaggaaacatttgtgt 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  ataaagcattgttatcctgcccgtgagatgctcacaatgcagagaaggaaacatttgtgt 843

                                                                        
Query: 400  aaacaaataaagaaaactcaagagatgatataatgtgtccagagagaagcataaacaagt 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  aaacaaataaagaaaactcaagagatgatataatgtgtccagagagaagcataaacaagt 783

                                                                        
Query: 460  atcagtggggtgctagggaggggggagccgtgctggctaagcactgtgcagggtgaagga 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  atcagtggggtgctagggaggggggagccgtgctggctaagcactgtgcagggtgaagga 723

                                                                        
Query: 520  ttcaggctggacaggaggtctggggactcctctacacagccagcagtccaggtgagcggg 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  ttcaggctggacaggaggtctggggactcctctacacagccagcagtccaggtgagcggg 663

                                                       
Query: 580  atcgctccaggttcgattgtctaataggatcattgcataaccc 622
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  atcgctccaggttcgattgtctaataggatcattgcataaccc 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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