BAC Information

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BAC

Clone NameMSMg01-488P01
Chromosome9 (Build37)
Map Location 75,435,535 - 75,436,108
singlet/doubletsinglet
Overlap geneTmod2
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3
Downstream geneLysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P01.T7 (MSMg01no488_p01.b1)MSMg01-488P01.TJ (MSMg01no488_p01.g1)
ACCAG567544AG567545
length690718
length of high quality
(start - end)
574 (35 - 608)383 (306 - 688)
definitionCHROMAT_FILE: MSMg01no488_p01.b1 PHD_FILE: MSMg01no488_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005CHROMAT_FILE: MSMg01no488_p01.g1 PHD_FILE: MSMg01no488_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCAGAGAGGATCCGCGGAATTCCTCATTAACGCTCTTTCCAGGTGAGT
CTAGCTTAGTTAAGACTAACCAGCACAGGGACCTAGAAGTGTTTCAGTGG
TTGGAAGATATGGCTGCACGGTTGTTTCTCAGCTCCTAATGATGCTGCCC
ATTTAACCACACAGAGGCCTGTACAGCTACCGACAGTCTTGGGAGGATTT
TTAGCATAAGTTATTGAATGCTGTGCATATATACCACACACTTCGGCAGG
AAAGGGGACCTGGAGACTTTCTTCTGTATAAAGAATTGTTCTACTATTTG
CAGCCATCCTAATACTTCAAAACTTTCTGCTGGTTATTGTTACCTGTGGT
GTCTTTCAGCTGTCCTCGGAGTCCACAATTTGCTCAACAATCCGAAGTTT
GATGAAGAGACAACCAACGGCGAAGGTCGCAAGGGGCCTGTGAGGAGTAA
GTTGACGAGGGCTCTGGGAGCATGGGAAGTGCCAGAGCCGGCCTGGTGCA
TGTTCCACCAGGCTCAGTGCCTAGTATCAGCTTCACCTAGTGCGGTTACT
CAGGGCACGCAGAGCCACAGAACACACATTCGTGGCATGTCTTCTAGTGG
GGAAAAAAACAAGTATTCCTGATAAGGTTGCACAGTCAGCTCAAAATGCA
AATAAAGTTTTCTGGTTCAAAGGATATTTTATCAATGAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCAGCTCTGCCTGCACCATGCCTGTCAAGATGCTGCCATGCTC
CCACCTTGATGATAATTGATTGAACCTCTGAACCTGTAGGCCAGCCCCAA
TTAAATGTCCTTTATAAGACTTGCCTTGATTTTGATGTCTGTTCACAGCA
GTAAAAGCCTAACTAAGATACCCATCTGAACTGGTGGGAATTTGCCTTGT
TATTTTATAGCCTTGGTGAATCTGTTAAGACCCTCTCTTAAGGTTTCCTT
TATTTAACTCAATGCATGCTTCTGAATGATGCTTCTTCACTCTATTGAAC
AAGATAATGCTTTCAGCTGTTATATTAGTCAGGGTTCTCTAGAGTCACAG
AACTTGTGAGTAGTCTCTATTTAGTAAAGGAAGTTATTATGATGACTTGC
AATCTGTAGTCCAACTCCCCAACAATGGTCAGCAGCAGCTGTGAATGGGA
GTCCAAGGATCTAGCAGTTGTTCAGACTCACAAGGCAAGCAGGAGAGGAA
GGGTCTCCCTCTTCTAATGTCCTTAGGTAGGTCTCCAGCAGAAGGTGTGG
CCCAGATTAAAGGTGTGACCACCATGCCTGGACCTGGGACTTGTATTGTC
CCAAATGACCTTGAACTCAGAGCTCTTCTTGCTTTAGTCTCCTGGGACTC
ATAGCCACTATGCCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p01.b1 MSMg01no488_p01.b1 CHROMAT_FILE:
MSMg01no488_p01.b1 PHD_FILE: MSMg01no488_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
         (574 letters)



>mm_chr9_75435335_75436308
          Length = 974

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttccaggtgagtctagcttagttaagactaaccagcacagggacctagaagtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctctttccaggtgagtctagcttagttaagactaaccagcacagggacctagaagtgttt 715

                                                                       
Query: 61  cagtggttggaagatatggctgcacggttgtttctcagctcctaatgatgctgcccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cagtggttggaagatatggctgcacggttgtttctcagctcctaatgatgctgcccattt 655

                                                                       
Query: 121 aaccacacagaggcctgtacagctaccgacagtcttgggaggatttttagcataagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaccacacagaggcctgtacagctaccgacagtcttgggaggatttttagcataagttat 595

                                                                       
Query: 181 tgaatgctgtgcatatataccacacacttcggcaggaaaggggacctggagactttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgaatgctgtgcatatataccacacacttcggcaggaaaggggacctggagactttcttc 535

                                                                       
Query: 241 tgtataaagaattgttctactatttgcagccatcctaatacttcaaaactttctgctggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 534 tgtataaagaattgttctactatttgcagccatcctaatacttcaaaacttcctgctggt 475

                                                                       
Query: 301 tattgttacctgtggtgtctttcagctgtcctcggagtccacaatttgctcaacaatccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tattgttacctgtggtgtctttcagctgtcctcggagtccacaatttgctcaacaatccg 415

                                                                       
Query: 361 aagtttgatgaagagacaaccaacggcgaaggtcgcaaggggcctgtgaggagtaagttg 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aagtttgatgaagagacgaccaacggcgaaggtcgcaaggggcctgtgaggagtaagttg 355

                                                                       
Query: 421 acgagggctctgggagcatgggaagtgccagagccggcctggtgcatgttccaccaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acgagggctctgggagcatgggaagtgccagagccggcctggtgcatgttccaccaggct 295

                                                                       
Query: 481 cagtgcctagtatcagcttcacctagtgcggttactcagggcacgcagagccacagaaca 540
           |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 294 cagtgcctagtatcggcttcacctagtgtggttactcagggcacgcagagctacagaaca 235

                                             
Query: 541 cacattcgtggcatgtcttctagtggggaaaaaa 574
           ||||||||||||| ||||||||||||||||||||
Sbjct: 234 cacattcgtggcacgtcttctagtggggaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)