BAC Information

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BAC

Clone NameMSMg01-489G22
Chromosome9 (Build37)
Map Location 113,326,104 - 113,467,256
singlet/doubletdoublet
Overlap geneLOC100043802, LOC636680
Upstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
Downstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489G22.T7 (MSMg01no489_g22.b1)MSMg01-489G22.TJ (MSMg01no489_g22.g1)
ACCAG567917AG567918
length759752
length of high quality
(start - end)		532 (55 - 586)541 (74 - 614)
definitionCHROMAT_FILE: MSMg01no489_g22.b1 PHD_FILE: MSMg01no489_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005CHROMAT_FILE: MSMg01no489_g22.g1 PHD_FILE: MSMg01no489_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,466,731 - 113,467,256)(113,326,104 - 113,326,644)
sequence
TTTTTNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTAGCTCTGATTTAGTAAAGTGCATCCCATACCCT
AGGAGTCAGTTTAATTCCAGATCATCAGCTAATATCGCCATTCCCTCTAG
CCACTTTCCATGGAGGAATCTGCAAAGATTAGAACTGAGCAGCTGCTGCA
GAAATACCCCAACGCTGGGAGGCATGAATTGGAGGATGGGTCTTCCTTCA
GCTCTTGGCTATAGCATAAAGGATAGGCTCTGTCTGTTGGTAGTTATTGC
TGGTGCTTTCCATGTTCATATTTTCTTGCTAAGCCATCTTTTTAGCTTGA
GCCTCCCTTAGACTGAGTCCTGTTTGGCCAAGTTGGTTGTCTGGAGTGAA
TGGCTTTAGTTCATTGGGTTGGTCTGACTTCCAGTCACAGGCTAAGGAAT
GATACCAAAGTCAGGGGGGCAGTTTTGTAGATGACTAGGGCTTGAGAGTG
CAATGAGGTCTGAGTGAACTGAGTTTCTGTTATTGATCTAGTGCTGAACA
TCTTGTCAAATACATGTTGTCATTGGCTCCCCCTACCAAGGGATGGGTGG
GAAAGGTAGAACAAAGGTATTTCACTGTTTTGAGATGTTCTGTGTATGGG
AGAAAGGCCATGATGTGTNCACACATCTTCTAGCTAAAGCTTAATGACAT
GCTGAGATGTCCTAAATGCCAAGAGGGTGTCCTGTGCAACTCATGCAGGT
CTCAGAACT

NNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGCGAAATTCCATCTGGCTAGTCACTCTCGTTAT
TATGCAAATGTCAGCTTTACCTGAAGGCAAGGGCTTTCTTCTTAATATTT
AAATTCCATCTCCTTTTCATTGATCTCTAAACAACAGTCCATCTTTGAAC
TTTTCTTAGAGAACTTTTTTAGGGATGAAATGTCCTCAGAGATTGTTTCC
CTAAAAATAGACAGAGCCAGATGCTTTAGAAAGATGTGTGTATGGGGCAG
GGAAGGCAACCATGTCCTCTTCTTGAAAAGGAGATGTGGGTGCCTTAGGT
CAAAGGCTGGTATTGGGCTGAGTGTCCGCTTTGCCACTGGCGTGCAGGAA
ATTTGCTGCTAAGGAAAGGTAGAATGCAGTCCAAGATAGGGGGTCCCAGC
TGTGTTTCCCTGGGTGAGAACCAGCGGGGGACTGGGACAGATGCTGTGGT
CCTCAATCTCCTGTGTACCCAGAGGAAGCTGGGGACCATGAGGAGGTGAG
AAAGGTAGTCCAAGGTCCTTCCCCTATACGCCAGGCAGGAAGGGGATGGC
TGAGCCCAGGACAGGGTGGTTCCTAGTGAGTGCCAAGAGTACAGTGGGGC
TGGAAGAGAGGCCTTCTCTGGGAGATTAGGCAGCCTCTCCTGCAGTGGTC
CTCGATGAAAGAGTTTGTTTGGCCAAACTGGCTTATTTCATGGTTGAAAT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_g22.b1 MSMg01no489_g22.b1 CHROMAT_FILE:
MSMg01no489_g22.b1 PHD_FILE: MSMg01no489_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:40 2005
         (532 letters)



>mm_chr9_113466528_113467459
          Length = 932

 Score =  917 bits (474), Expect = 0.0
 Identities = 513/526 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattagctctgatttagtaaagtgcatcccataccctaggagtcagtttaattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaattcattagctctgatttagtaaagtgcatcccataccctaggagtcagtttaattc 670

                                                                       
Query: 64  cagatcatcagctaatatcgccattccctctagccactttccatggaggaatctgcaaag 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 669 cagatcatcagctaatatcgccatcccctctagccactttccatggaggaatctgcaaag 610

                                                                       
Query: 124 attagaactgagcagctgctgcagaaataccccaacgctgggaggcatgaattggaggat 183
           |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| 
Sbjct: 609 attagaactgagcaactgctgcagaaataccccaaagctgggaggcatcaattggaggac 550

                                                                       
Query: 184 gggtcttccttcagctcttggctatagcataaaggataggctctgtctgttggtagttat 243
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 549 gggtcttccttcagctcttgtctatagcataaaggacaggctctgtctgttggtagttat 490

                                                                       
Query: 244 tgctggtgctttccatgttcatattttcttgctaagccatctttttagcttgagcctccc 303
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 489 tgctggtgctttccatgttcatattttcttgctgacccatctttttagcttgagcctccc 430

                                                                       
Query: 304 ttagactgagtcctgtttggccaagttggttgtctggagtgaatggctttagttcattgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttagactgagtcctgtttggccaagttggttgtctggagtgaatggctttagttcattgg 370

                                                                       
Query: 364 gttggtctgacttccagtcacaggctaaggaatgataccaaagtcaggggggcagttttg 423
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 369 gttggtctgacttccagtcacaggctgaggaatgataccaaagtcaagggggcagttttg 310

                                                                       
Query: 424 tagatgactagggcttgagagtgcaatgaggtctgagtgaactgagtttctgttattgat 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 309 tagatgactagggcttgagagtgcaatgaggtctgagtgaactgagtttcagttattgat 250

                                                         
Query: 484 ctagtgctgaacatcttgtcaaatacatgttgtcattggctccccc 529
           ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 249 ctagtgctgaacatcttgtcaaatacatgttgtcatttgctccccc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_g22.g1 MSMg01no489_g22.g1 CHROMAT_FILE:
MSMg01no489_g22.g1 PHD_FILE: MSMg01no489_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:40 2005
         (541 letters)



>mm_chr9_113325904_113326844
          Length = 941

 Score = 1023 bits (529), Expect = 0.0
 Identities = 538/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccatctggctagtcactctcgttattatgcaaatgtcagctttacctgaaggcaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccatctggctagtcactctcgttattatgcaaatgtcagctttacctgaaggcaaggg 260

                                                                       
Query: 61  ctttcttcttaatatttaaattccatctccttttcattgatctctaaacaacagtccatc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcttcttaatatttgaattccatctccttttcattgatctctaaacaacagtccatc 320

                                                                       
Query: 121 tttgaacttttcttagagaacttttttagggatgaaatgtcctcagagattgtttcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaacttttcttagagaacttttttagggatgaaatgtcctcagagattgtttcccta 380

                                                                       
Query: 181 aaaatagacagagccagatgctttagaaagatgtgtgtatggggcagggaaggcaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatagacagagccagatgctttagaaagatgtgtgtatggggcagggaaggcaaccat 440

                                                                       
Query: 241 gtcctcttcttgaaaaggagatgtgggtgccttaggtcaaaggctggtattgggctgagt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctcttctagaaaaggagatgtgggtgccttaggtcaaaggctggtattgggctgagt 500

                                                                       
Query: 301 gtccgctttgccactggcgtgcaggaaatttgctgctaaggaaaggtagaatgcagtcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccgctttgccactggcgtgcaggaaatttgctgctaaggaaaggtagaatgcagtcca 560

                                                                       
Query: 361 agatagggggtcccagctgtgtttccctgggtgagaaccagcgggggactgggacagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatagggggtcccagctgtgtttccctgggtgagaaccagcgggggactgggacagatg 620

                                                                       
Query: 421 ctgtggtcctcaatctcctgtgtacccagaggaagctggggaccatgaggaggtgagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtggtcctcaatctcctgtgtacccagaggaagctggggaccatgaggaggtgagaaa 680

                                                                       
Query: 481 ggtagtccaaggtccttcccctatacgccaggcaggaaggggatggctgagcccaggaca 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtagtccaaggtccttcccctataggccaggcaggaaggggatggctgagcccaggaca 740

            
Query: 541 g 541
           |
Sbjct: 741 g 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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