Query= MSMg01no489_j12.b1 MSMg01no489_j12.b1 CHROMAT_FILE:
MSMg01no489_j12.b1 PHD_FILE: MSMg01no489_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:53 2005
(529 letters)
>mm_chr9_47295762_47296697
Length = 936
Score = 623 bits (322), Expect = 0.0
Identities = 369/392 (94%), Gaps = 15/392 (3%)
Strand = Plus / Minus
Query: 149 tgagtttctagccttgccttcatgactttcagtatgggggatgctgatgtgacctctcag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tgagtttctagccttgccttcatgactttcagtatgggggatgctgatgtgacctctcag 877
Query: 209 ctccctggtaacctgtttgcatgccttccctgtcattattttt----tcttccatctgga 264
|||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 876 ctccctggtaacctgtttgcatgccttccctgtcatta----tgggctcttccatctgga 821
Query: 265 gtctgagcccaaatccatcattctgcatataagttgtttttggtcgtggcattcgattac 324
|||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 820 gtctgaacccaaatccatcattctgcatataagatgcttttggtcatggcattcgattac 761
Query: 325 agcaacagagaagtaactggcacactatctgctccttacacacggacatggagggaatcg 384
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 agcaacagagaagtaactggtacactatctgctccttacacacggacatggagggaatcg 701
Query: 385 ggccctgaataaggaaaaggacaacggggggcgg-----gggagggaa--tcacaggaaa 437
||||||||||||||||||||||| ||||||| || ||| ||||| ||||||||||
Sbjct: 700 ggccctgaataaggaaaaggacagcggggggtggttggagggggggaaaatcacaggaaa 641
Query: 438 ccctcaagaccacgtagaaaatgagtacataaaatgagaaggggtttccgagtcctcacg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ccctcaagaccacgtagaaaatgagtacataaaatgagaaggggtttccgagtcctcacg 581
Query: 498 gtgaggctcgaattctggctgcaaatggaaga 529
||||||||||||||||||||||||||||||||
Sbjct: 580 gtgaggctcgaattctggctgcaaatggaaga 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 936
Length adjustment: 10
Effective length of query: 519
Effective length of database: 926
Effective search space: 480594
Effective search space used: 480594
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_j12.g1 MSMg01no489_j12.g1 CHROMAT_FILE:
MSMg01no489_j12.g1 PHD_FILE: MSMg01no489_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:53 2005
(285 letters)
>mm_chr9_47163136_47163820
Length = 685
Score = 520 bits (269), Expect = e-152
Identities = 281/285 (98%)
Strand = Plus / Plus
Query: 1 gccctacctcttaaacatcgtgccagtgtaagggggttacagagctacagtcccatgtga 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gccctacctcttaaacatcgtgccagtgtaagggggacacagagctacagtcccatgtga 260
Query: 61 cacaaggagaggcatacctcagctgatcccgcctctgtcgagcaagtaaagcatgcaaat 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cacaaggagaggcatacctcagctgatcctgcctctgtcgagcaagtaaagcatgcaaat 320
Query: 121 ggagccccagcctgtcactaggactagccatttttcccaaagatgccccagcaaggttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagccccagcctgtcactaggactagccatttttcccaaagatgccccagcaaggttag 380
Query: 181 cattaggaaaagcgtgggttttgcagaaagagcaggaatgaggacaatatgatatgattc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaggaaaagcgtgggttgtgcagaaagagcaggaatgaggacaatatgatatgattc 440
Query: 241 cctacgctgggtcatccttgatgacaggtgggtcccctgggtgca 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctacgctgggtcatccttgatgacaggtgggtcccctgggtgca 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
