BAC Information

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BAC

Clone NameMSMg01-489L09
Chromosome9 (Build37)
Map Location 122,507,806 - 122,667,833
singlet/doubletdoublet
Overlap geneLOC666218
Upstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
Downstream geneLOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489L09.T7 (MSMg01no489_l09.b1)MSMg01-489L09.TJ (MSMg01no489_l09.g1)
ACCAG568128AG568129
length741751
length of high quality
(start - end)
275 (52 - 326)413 (331 - 743)
definitionCHROMAT_FILE: MSMg01no489_l09.b1 PHD_FILE: MSMg01no489_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:03 2005CHROMAT_FILE: MSMg01no489_l09.g1 PHD_FILE: MSMg01no489_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,507,806 - 122,508,071)(122,667,481 - 122,667,833)
sequence
TTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCATCTCTCTCCACAAAGAGATGCCTTAGTGATCTCTTTGCT
TTATAGTGTGTGGGTCAGTGACTTATCTATCTACTTGAGATGACTAGTCT
TAACAATTTGACCTGTCTTGGGAAAATATAAACCAGCAATCACTTCCTAG
AAATCCCAAAGGCTCTAAGCAACTGGATGTTAGTGGCCTCGCAGTGGACA
TTTGTTAGTTTCTTTGACTCTTCTCCGTGTAACCACCGGGTGATCAGTGA
CCATGGCTTGTGTAGACTCTAATATGGGATGAAGTTCCATGTCATATCTC
AAATTTCTGTACCAGTCTCTGGATAGCAGAATGGGCCAAGCATACTTTTC
CCTTTTGGGTTTCAAGGGGGAACCCCAAGGCCAAAAGGGCCCGGGGGGGG
TCCAAAAAGCACCCCCCCTGGGGGAAAAACTTTTTTTGGGGTGTTTACCC
GGGGGGGGATTTTTTTTAAAAAAATTAGGGGGGGGGGGGGGGTCCCCTTC
TTGGGGGGGGTTTCAAAAAAAAGGGGGGGGAGAAAAAACATTTTTCTCTT
AAAAGGGAAGTTTCTTCCCCCCCCCTTAATAAAAAAAAAAAAAAAGGGGG
GGAGAATTTTCTTTTTCCTCTCCCCTTTTTTTNNCCNGGCNCAGGNGATC
GGCGCAGTTATTATGGGTTAGGGCGGCCGCTTTCCTCTCCC
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAATGGAGAATTATTCAAGTCCTAACAT
GACAAATACCAAGTTAGAACTTCAGCAAATTATGTAATTTACTGGTTACT
ACCAAAATAATTTCACTATATGGTATAAAGAGACTTGACAATGTGATATG
TAAGAACCTCTCTCATATCCCAGCCATTTAAAAATATTTTTGTTGGTGCA
TGCCTTTAATATTAGCACTCGGAGGCAAAAGCTCTGTGAATTCCAGGCCA
GTCAGGATTATATAGTGGGGCTTCTTCTCTAGCTTGCTCACTTGCTTGCT
CACTCAACCCTGACATACATATATACATACATACATACATACATACATAC
ATACATACATACATACATACACACATTTATTTATTTAATTTATGAAACAG
GGTTTCACTATGTAACTCTGCTCTGGCTGGCCTGGAACTCACTCTGTAGA
CCAGGCTGGCCTTAAACCCACAGAGACCCACCTGCCTCTGACTCCTGAGT
ACTGAGAGTAAAGGCATGCACACCACACCTGGCACACATGTATGTTTTAT
TTTGTGTGCTTGCAGTCAAGGTGCAGCTGTGGAAATCAGATGGCAACTTG
CTAGGCCAGGCAAGTATGTATCTTCACCTACTAATCCATCTTGCTGCTTC
TAAAAATAGTTTTAAAACTTGAAAGTCAAAGTAAAAAGTTAAGTTCAACA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_l09.b1 MSMg01no489_l09.b1 CHROMAT_FILE:
MSMg01no489_l09.b1 PHD_FILE: MSMg01no489_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:03 2005
         (275 letters)



>mm_chr9_122507603_122508271
          Length = 669

 Score =  453 bits (234), Expect = e-132
 Identities = 261/276 (94%), Gaps = 14/276 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcatctctctcca----caaagagatgccttagtgatctctttgctttatagtgtg 59
           |||||||||||||   |    ||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattcatctctc---aaaaacaaagagatgccttagtgatctctt-gctttatagtgtg 259

                                                                       
Query: 60  tgggtcagtgacttatctatctacttgagatgactagtcttaacaatttgacctgtcttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggtcagtgacttatctatctacttgagatgactagtcttaacaatttgacctgtcttg 319

                                                                       
Query: 120 ggaaaatataaaccagcaatcacttcctagaaatcccaaaggctctaagcaactggatgt 179
           |||||||||||||||||||||||     | |||||||||||||||||||||||||||| |
Sbjct: 320 ggaaaatataaaccagcaatcac-----a-aaatcccaaaggctctaagcaactggatct 373

                                                                       
Query: 180 tagtggcctcgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagtggcctcgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccggg 433

                                               
Query: 240 tgatcagtgaccatggcttgtgtagactctaatatg 275
           ||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgatcagtgaccatggcttgtgtagactctaatatg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 669
Length adjustment: 9
Effective length of query: 266
Effective length of database: 660
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no489_l09.g1 MSMg01no489_l09.g1 CHROMAT_FILE:
MSMg01no489_l09.g1 PHD_FILE: MSMg01no489_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:03 2005
         (413 letters)



>mm_chr9_122667028_122667840
          Length = 813

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 61  acatacatacatacatacatacatacatacacacatttatttatttaatttatgaaacag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 806 acatacatacatacatacatacatacatacatacatttatttatttaatttatgaaacag 747

                                                                       
Query: 121 ggtttcactatgtaactctgctctggctggcctggaactcactctgtagaccaggctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggtttcactatgtaactctgctctggctggcctggaactcactctgtagaccaggctggc 687

                                                                       
Query: 181 cttaaacccacagagacccacctgcctctgactcctgagtactgagagtaaaggcatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cttaaacccacagagacccacctgcctctgactcctgagtactgagagtaaaggcatgca 627

                                                                       
Query: 241 caccacacctggcacacatgtatgttttattttgtgtgcttgcagtcaaggtgcagctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccacacctggcacacatgtatgttttattttgtgtgcttgcagtcaaggtgcagctgt 567

                                                                       
Query: 301 ggaaatcagatggcaacttgctaggccaggcaagtatgtatcttcacctactaatccatc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaaatcagatggcaacttgcaaggccaggcaagtatgtatcttcacctactaatccatc 507

                                                                
Query: 361 ttgctgcttctaaaaatagttttaaaacttgaaagtcaaagtaaaaagttaag 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgctgcttctaaaaatagttttaaaacttgaaagtcaaagtaaaaagttaag 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)