Query= MSMg01no489_l09.b1 MSMg01no489_l09.b1 CHROMAT_FILE:
MSMg01no489_l09.b1 PHD_FILE: MSMg01no489_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:03 2005
(275 letters)
>mm_chr9_122507603_122508271
Length = 669
Score = 453 bits (234), Expect = e-132
Identities = 261/276 (94%), Gaps = 14/276 (5%)
Strand = Plus / Plus
Query: 4 gaattcatctctctcca----caaagagatgccttagtgatctctttgctttatagtgtg 59
||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattcatctctc---aaaaacaaagagatgccttagtgatctctt-gctttatagtgtg 259
Query: 60 tgggtcagtgacttatctatctacttgagatgactagtcttaacaatttgacctgtcttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggtcagtgacttatctatctacttgagatgactagtcttaacaatttgacctgtcttg 319
Query: 120 ggaaaatataaaccagcaatcacttcctagaaatcccaaaggctctaagcaactggatgt 179
||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct: 320 ggaaaatataaaccagcaatcac-----a-aaatcccaaaggctctaagcaactggatct 373
Query: 180 tagtggcctcgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagtggcctcgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccggg 433
Query: 240 tgatcagtgaccatggcttgtgtagactctaatatg 275
||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgatcagtgaccatggcttgtgtagactctaatatg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 669
Length adjustment: 9
Effective length of query: 266
Effective length of database: 660
Effective search space: 175560
Effective search space used: 175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no489_l09.g1 MSMg01no489_l09.g1 CHROMAT_FILE:
MSMg01no489_l09.g1 PHD_FILE: MSMg01no489_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:03 2005
(413 letters)
>mm_chr9_122667028_122667840
Length = 813
Score = 667 bits (345), Expect = 0.0
Identities = 351/353 (99%)
Strand = Plus / Minus
Query: 61 acatacatacatacatacatacatacatacacacatttatttatttaatttatgaaacag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 806 acatacatacatacatacatacatacatacatacatttatttatttaatttatgaaacag 747
Query: 121 ggtttcactatgtaactctgctctggctggcctggaactcactctgtagaccaggctggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggtttcactatgtaactctgctctggctggcctggaactcactctgtagaccaggctggc 687
Query: 181 cttaaacccacagagacccacctgcctctgactcctgagtactgagagtaaaggcatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cttaaacccacagagacccacctgcctctgactcctgagtactgagagtaaaggcatgca 627
Query: 241 caccacacctggcacacatgtatgttttattttgtgtgcttgcagtcaaggtgcagctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccacacctggcacacatgtatgttttattttgtgtgcttgcagtcaaggtgcagctgt 567
Query: 301 ggaaatcagatggcaacttgctaggccaggcaagtatgtatcttcacctactaatccatc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaaatcagatggcaacttgcaaggccaggcaagtatgtatcttcacctactaatccatc 507
Query: 361 ttgctgcttctaaaaatagttttaaaacttgaaagtcaaagtaaaaagttaag 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgctgcttctaaaaatagttttaaaacttgaaagtcaaagtaaaaagttaag 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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