BAC Information

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BAC

Clone NameMSMg01-489M05
Chromosome9 (Build37)
Map Location 119,152,907 - 119,307,246
singlet/doubletdoublet
Overlap geneOxsr1, Myd88, Acaa1a, Xylb
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik
Downstream geneAcvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489M05.T7 (MSMg01no489_m05.b1)MSMg01-489M05.TJ (MSMg01no489_m05.g1)
ACCAG568168AG568169
length746736
length of high quality
(start - end)		580 (55 - 634)648 (78 - 725)
definitionCHROMAT_FILE: MSMg01no489_m05.b1 PHD_FILE: MSMg01no489_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:07 2005CHROMAT_FILE: MSMg01no489_m05.g1 PHD_FILE: MSMg01no489_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,306,739 - 119,307,246)(119,152,907 - 119,153,554)
sequence
TTAAGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTGTACTTTTTGAATAAGACAACGTGATAAAAGTT
TTCTCAAAAATACAAGCAAACGGGAAGGGGGAGTTGGGGGAGGGGAAGCA
ACAAAGGCTGCATGAGCCAGCTTCGGTCCAAAAGGACAGAGAAACGCAAG
AAAGAAAGGGCTACGTGGGACAAGAGAGTCCTAGACAGTTAGGAAATACG
CCATGGAAAACAAAAAGGCAACCCAGCAGCTGGTGACGTGGGCATGGACA
TTCCTCAGTCCCACTGCAAACAGGCACAGAAAGAGACTGGAATCAGAGCG
GTGGCACCACGGTGCTCTTGAAGAGGACCAGGCTTTGGTCCCCAGCACCC
ACATAGCAGCTTACAAGGTCTCTGACTCCCGTTCCAGGGAGCCAAGGTCC
TCTTCTGACCTCAGCAGGCAATGCACACGTGTGCAAAGACACATACAGGC
AAAACACGTATATACCAAAAATAAAAATAATAAATCTCTAAAAACAGAAA
AGAACCAAACATCTGGATTCAAGGAGTTCAAAACAAAGCTTTAAAAAACA
AAACAAGCCCAGCATGGGGGCGCACGCCTTTAATCCCAGCACTTGGGAGG
CAGAGGCAGGCAAATTTTTGAGTTTGAGGCCCCCCCGGGGTTCTCAGTGA
GTTCCTGGATAGTCTAGGATTCTCCAAGATACCCTGTCTCGAAAAA

TTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTTCTGCACCATGCCT
GCCTGGATGCTGCCATGCTCCGGCCTTGATAATGAACTGAACCTCTGAAC
GTGTAAGCCAACCCCAATTGTTGTTCTTAGAAGAGTTGCCTTGGTCATGG
TGTCTGTTCATAGCAGTAAAACCCTAACTAAAACAGGTAGTGTGCACACA
TTCATACAGATGCCTAGCAATTAAAACTCCTAAAAACATACCTAAAAAGA
AAAACACCCTCTGTATATCTGTATGCAGACTGTGGAACCTAGGAACAGAC
ATTTGCTGGCCATTCCTAACCATGAGTTAACAAAGGCAAGAAAAACGACA
CCTTGTTCCAGGTCGAAGTTCACAATGAGAAGCAGTATTGTGACAAGGTT
CAGCTTCCACATGAGGAAAGGGAGCCAGGAACCCTGTCTCTTGCGTGTTT
ATCAGAGAGAAGCATATGCAAGGATAAGAGCAAGGACTATGGACTCTGGA
AGAACTTGACTTCAGTGCCTCCTTCTAGATTATGAACTGGTTGCTCTGGG
TTCCTCTAACCTGGAGTTCATCCTCTCCAAATGGGAATAATTGTTCCTTA
GATCCCTGTCTTAAGAACTGAATGGGATAACGTTTAGGGATATGCATGCC
TCATAGTGAGTGGCATTTATTAATAGGCTTGTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_m05.b1 MSMg01no489_m05.b1 CHROMAT_FILE:
MSMg01no489_m05.b1 PHD_FILE: MSMg01no489_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:07 2005
         (580 letters)



>mm_chr9_119306739_119307718
          Length = 980

 Score =  944 bits (488), Expect = 0.0
 Identities = 503/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttgtactttttgaataagacaacgtgataaaagttttctcaaaaatacaagc 63
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 508 ggaattccttgtacattttgaataagacaacgtgataaaagttttctcgaaaatacaagc 449

                                                                       
Query: 64  aaacgggaagggggagttgggggaggggaagcaacaaaggctgcatgagccagcttcggt 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatgggaagggggagttgggggaggggaagcaacaaaggctgcatgagccagcttcggt 389

                                                                       
Query: 124 ccaaaaggacagagaaacgcaagaaagaaagggctacgtgggacaagagagtcctagaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccaaaaggacagagaaacgcaagaaagaaagggctacgtgggacaagagagtcctagaca 329

                                                                       
Query: 184 gttaggaaatacgccatggaaaacaaaaaggcaacccagcagctggtgacgtgggcatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 328 gttaggaaatacgccatggaaaacaaaaaggcaacccagcagctggtgacgagggcatgg 269

                                                                       
Query: 244 acattcctcagtcccactgcaaacaggcacagaaagagactggaatcagagcggtggcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acattcctcagtcccactgcaaacaggcacagaaagagactggaatcagagcggtggcac 209

                                                                       
Query: 304 cacggtgctcttgaagaggaccaggctttggtccccagcacccacatagcagcttacaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cacggtgctcttgaagaggaccaggctttggtccccagcacccacatagcagcttacaag 149

                                                                       
Query: 364 gtctctgactcccgttccagggagccaaggtcctcttctgacctcagcaggcaatgcaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtctctgactcccgttccagggagccaaggtcctcttctgacctcagcaggcaatgcaca 89

                                                                       
Query: 424 cgtgtgcaaagacacatacaggcaaaacacgtatataccaaaaataaaaataataaatct 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 88  cgtgtgcaaagacacatacaggcaaaatacgtatataccaaaaataaaaataataaatct 29

                                       
Query: 484 ctaaaaacagaaaagaaccaaacatctg 511
           ||||||||||||||||||||||||||||
Sbjct: 28  ctaaaaacagaaaagaaccaaacatctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_m05.g1 MSMg01no489_m05.g1 CHROMAT_FILE:
MSMg01no489_m05.g1 PHD_FILE: MSMg01no489_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:07 2005
         (648 letters)



>mm_chr9_119152707_119153754
          Length = 1048

 Score = 1245 bits (644), Expect = 0.0
 Identities = 647/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctccttctgcaccatgcctgcctggatgctgccatgctccggccttgataatgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctccttctgcaccatgcctgcctggatgctgccatgctccggccttgataatgaac 260

                                                                       
Query: 61  tgaacctctgaacgtgtaagccaaccccaattgttgttcttagaagagttgccttggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacctctgaacgtgtaagccaaccccaattgttgttcttagaagagttgccttggtca 320

                                                                       
Query: 121 tggtgtctgttcatagcagtaaaaccctaactaaaacaggtagtgtgcacacattcatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgtctgttcatagcagtaaaaccctaactaaaacaggtagtgtgcacacattcatac 380

                                                                       
Query: 181 agatgcctagcaattaaaactcctaaaaacatacctaaaaagaaaaacaccctctgtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgcctagcaattaaaactcctaaaaacatacctaaaaagaaaaacaccctctgtata 440

                                                                       
Query: 241 tctgtatgcagactgtggaacctaggaacagacatttgctggccattcctaaccatgagt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcatgcagactgtggaacctaggaacagacatttgctggccattcctaaccatgagt 500

                                                                       
Query: 301 taacaaaggcaagaaaaacgacaccttgttccaggtcgaagttcacaatgagaagcagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacaaaggcaagaaaaacgacaccttgttccaggtcgaagttcacaatgagaagcagta 560

                                                                       
Query: 361 ttgtgacaaggttcagcttccacatgaggaaagggagccaggaaccctgtctcttgcgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgacaaggttcagcttccacatgaggaaagggagccaggaaccctgtctcttgcgtg 620

                                                                       
Query: 421 tttatcagagagaagcatatgcaaggataagagcaaggactatggactctggaagaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatcagagagaagcatatgcaaggataagagcaaggactatggactctggaagaactt 680

                                                                       
Query: 481 gacttcagtgcctccttctagattatgaactggttgctctgggttcctctaacctggagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacttcagtgcctccttctagattatgaactggttgctctgggttcctctaacctggagt 740

                                                                       
Query: 541 tcatcctctccaaatgggaataattgttccttagatccctgtcttaagaactgaatggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatcctctccaaatgggaataattgttccttagatccctgtcttaagaactgaatggga 800

                                                           
Query: 601 taacgtttagggatatgcatgcctcatagtgagtggcatttattaata 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taacgtttagggatatgcatgcctcatagtgagtggcatttattaata 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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