BAC Information

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BAC

Clone NameMSMg01-489M07
Chromosome9 (Build37)
Map Location 13,531,827 - 13,532,062
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
Downstream geneMtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489M07.T7 (MSMg01no489_m07.b1)MSMg01-489M07.TJ (MSMg01no489_m07.g1)
ACCAG568172AG568173
length744736
length of high quality
(start - end)
643 (77 - 719)236 (80 - 315)
definitionCHROMAT_FILE: MSMg01no489_m07.b1 PHD_FILE: MSMg01no489_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:08 2005CHROMAT_FILE: MSMg01no489_m07.g1 PHD_FILE: MSMg01no489_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTNGATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGAAAGG
ATCCGCGGAATTCAATGCCTACACTAAAACATAGTAAAAGTAATATACAG
CAAACCAGTAGTCAACATCAAACAAAATGGAGAAAAACTTGAAGCAATCC
CACTAATATCAGGGACTAGAAAAGGCTGCCCACTTTCTCCCTACCTATTC
AATACAGTACTCGAAGACCTAGACAGAGCAATTAGACAACAAAAGGAGAT
CAAGGGGATACAAATTAGAAAGGAAGAAGTCAAAATATCACTATTTGCAG
ATGATATGATAGTCTACTTAAGTGATTTCAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAATTCTCAACTGAAGAATACCAAATGGCTGAGGAGCAC
CTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCAGGCCAGTGAGAATGGATAAAGTCAAAAACT
CAGGTGACAGCTTGGAATACCCAAGATACAATTCACAGACCACATGAAGT
TCAAAAGAAGGAAGACCAAAGTGTGGGTACTTTGGCCCTTCCTAGGAAGG
GGAACAAAATACCCACAGGAAGAGATACTGAGACAAAGTATGGAGCAGAG
ACTGAAGGAAAGGCCATCCAGTGACTCTCCCACCTGGGGATCCATCCCAT
ATACAGTTACCAAACCCAGACACTATTGTAGATGCCAACAAGTG
AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCTTCCCTCTTCTGCAG
TGCCTCTGAGGTAGTCTCCCTCTTAGGTTTCTTAAGGAGAATCACAGTGG
AGGTTTTGCTCACAGACCATTCCATTTCTTAACCTGGTTGTAAATGTAAT
GGCCTGTTTCAATTGACCACTTGGTTACACTAAGAAATGCCTAGAGCATA
AGTGAAGGACACCTCTGGACATGGTCTGTGAAGGAGGAGAAAAGACTTGC
ATGGAACTCAGACTGGATTTTTTATGAGAACAGAGAGAGATCTCTGAGCA
CTGACATTCCCATCTCTATTTCCTGACCATGGTGATGTGGGAAAGCAGAT
TCCAAGTGCCACAGACAAGACCAAGTGTACTGCTGTGCCTCCTCTGCCAT
GATGGACCACAAGCAAAGACAACCATTGCTTCTTATCAGGTAATTGGTCA
CAACAACTAACACAGTATACTCCACTATACTATACTATTCCTTAGATTGC
ATCCATATCTATATCTATATGGTATATATGCATAATATATACATAGATAT
ATATTGTACATGTTTTATGTATTTCAAAATAAATAATTTATAAATGCTAT
CAGATTATATATGTGAAAATTAGGGTGAGAGATAGCAACAGAACAGTATT
GCTTTTTTTTTCATTTATAAGTGGATGTTGGTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_m07.g1 MSMg01no489_m07.g1 CHROMAT_FILE:
MSMg01no489_m07.g1 PHD_FILE: MSMg01no489_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:08 2005
         (236 letters)



>mm_chr9_13531627_13532262
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctcttccctcttctgcagtgcctctgaggtagtctccctcttaggtttcttaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctcttccctcttctgcagtgcctctgaggtagtctccctcttaggtttcttaaggag 260

                                                                       
Query: 61  aatcacagtggaggttttgctcacagaccattccatttcttaacctggttgtaaatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcacagtggaggttttgctcacagaccattccatttcttaacctggttgtaaatgtaa 320

                                                                       
Query: 121 tggcctgtttcaattgaccacttggttacactaagaaatgcctagagcataagtgaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tggcctgtttcaattgaccacttggttacactaagaaatgcctagggcataagtgaagga 380

                                                                   
Query: 181 cacctctggacatggtctgtgaaggaggagaaaagacttgcatggaactcagactg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctctggacatggtctgtgaaggaggagaaaagacttgcatggaactcagactg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)