BAC Information

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BAC

Clone NameMSMg01-490A03
Chromosome9 (Build37)
Map Location 59,891,948 - 60,064,775
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490A03.T7 (MSMg01no490_a03.b1)MSMg01-490A03.TJ (MSMg01no490_a03.g1)
ACCAG568349AG568350
length762755
length of high quality
(start - end)
668 (69 - 736)602 (77 - 678)
definitionCHROMAT_FILE: MSMg01no490_a03.b1 PHD_FILE: MSMg01no490_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:27 2005CHROMAT_FILE: MSMg01no490_a03.g1 PHD_FILE: MSMg01no490_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,891,948 - 59,892,615)(60,064,174 - 60,064,775)
sequence
GCTGAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGACTATTCCTGTCTACATAACGAGTTCTAGGCAAGCCAGGGC
TACACAGAGAGACCCTGTCTCAAAAACCAAAACCAAAACCACCCAAGCGA
ACAGAAACCCAAGTTCCAGTTCAGGGGTTGCTTTCTTAATCCACAGAGAA
TGTCCCCAGTAGGAATCAAAAAGCAGGAGTTGACATTTTGCATATTTCTG
AGACAGACAATACAATTAAAGGCAAAAACCAAGTCATAATTGAACTCTTT
CCCATGGGACAAACAAGCCAACGTTTCCAGGGGAGCGGTGTGAACGCCTA
AGGATGGGGGCCAAGGGTCATTTTGTTCCAAGGAGATCCAGAAGCTTGTC
AAGCCGAGGGATGGTGGAAGAAAAAAGCAGGCAGATGTAGGGACATACGG
GGTCTCCTAAGTCAAAGGGAGGGGCACTGCCAGACTCCAGGTGGGAGTAA
ACATAAAGATAAGCAAAATCTCAAAAAGCTACGTATAGCTGAAACAGATG
TAGGAAGCAAACAGGTTCCACACGCACTTGCATATCTAGGCAGTGATCCG
GAGGAAAGAAAGGTGTCACAGATCAACAAAAACTATAAAATACTTAAAGA
TACACCTGATAAAGCTGACAGAGTTAACACAAAGAAACCTTATTAAAGCT
CGTGACCCAGGGCACACTTTGATGCTCCTGATTCAAAAGACTCAACGCTG
TGGAAATGGCCC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCCCAAGTGGAAGGCAGCTT
AGGTGCCAAGAGATGAAAGGATGGGTGGACAGGAGTGGTATGGGGATATG
GAGGCCACATTGGAGAATGCTGCTCAGGATGGGAAAAAGAAATTAAAGCC
ACTGCTTCCTGTGCCTCATTCATGAGTGCCTTGCTAGCCCTGGGCCCCTG
GTCCCTCCTGCATTCACCCCTTTCCAGCCTTGTTGTGTCACCTTCTCCTG
GAGGTGGAGTCTCCGGCTTCCTCACCATGTAGCCTAGGTCTCCTCCCAGC
CTCCTCCTTGCACCTTTGGCTGAAAGTCTCACACCAGCATCCCTGAAACT
GCTGTCTTTCCTCCCCTGACTCCATCCTTCTTCTCTGGCTACTTTTCCAA
CCATCAAGATAATCTTCACTTGAGAGCTGGACTTTGTACCTTAAGAAAGT
GCTACTCAGGGCTTTAACTTTAATTTTTTAAACCTTGTTTTTAATGATGG
TTCTTAAACACTTTAACTTTCCTTGTAGCCCACCACCCTCCAGAGGCAGT
GGGGAAGAAAGGATATGGGGGAAATGGACCTGTTTAGAAATGGTTCTTTG
GAGCAACTCCTGTCTGTGTTGTCTAGAAATTGGCAGTTCAGTTCACAGGT
CAGCTGCGGCTGTTCAGTCCATTCGCAAACACTTCATGGATATGCCAGCA
GTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_a03.b1 MSMg01no490_a03.b1 CHROMAT_FILE:
MSMg01no490_a03.b1 PHD_FILE: MSMg01no490_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:27 2005
         (668 letters)



>mm_chr9_59891748_59892815
          Length = 1068

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctacataacgagttctaggcaagccagggctacacagagagaccctgtctcaaaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctacataacgagttctaggcaagccagggctacacagagagaccctgtctcaaaaacc 260

                                                                       
Query: 61  aaaaccaaaaccacccaagcgaacagaaacccaagttccagttcaggggttgctttctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccaaaaccacccaagcgaacagaaacccaagttccagttcaggggttgctttctta 320

                                                                       
Query: 121 atccacagagaatgtccccagtaggaatcaaaaagcaggagttgacattttgcatatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccacagagaatgtccccagtaggaatcaaaaagcaggagttgacattttgcatatttc 380

                                                                       
Query: 181 tgagacagacaatacaattaaaggcaaaaaccaagtcataattgaactctttcccatggg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagacagacaatacaactaaaggcaaaaaccaagtcataattgaactctttcccatggg 440

                                                                       
Query: 241 acaaacaagccaacgtttccaggggagcggtgtgaacgcctaaggatgggggccaagggt 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 acaaacaagccaacgtttccaggggagcagtgtgaacgcctaaggatgggggccaagggt 500

                                                                       
Query: 301 cattttgttccaaggagatccagaagcttgtcaagccgagggatggtggaagaaaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattttgttccaaggagatccagaagcttgtcaagccgagggatggtggaagaaaaaagc 560

                                                                       
Query: 361 aggcagatgtagggacatacggggtctcctaagtcaaagggaggggcactgccagactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagatgtagggacatacggggtctcctaagtcaaagggaggggcactgccagactcc 620

                                                                       
Query: 421 aggtgggagtaaacataaagataagcaaaatctcaaaaagctacgtatagctgaaacaga 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 aggtgggagtaaacataaagataagcaaaatctcaaaaagttacgtatagctgaaacaga 680

                                                                       
Query: 481 tgtaggaagcaaacaggttccacacgcacttgcatatctaggcagtgatccggaggaaag 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tgtaggaagcaaacaggttccacacgcacttgcatatctaggcagtgacccggaggaaag 740

                                                                       
Query: 541 aaaggtgtcacagatcaacaaaaactataaaatacttaaagatacacctgataaagctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaggtgtcacagatcaacaaaaactataaaatacttaaagatacacctgataaagctga 800

                                                                       
Query: 601 cagagttaacacaaagaaaccttattaaagctcgtgacccagggcacactttgatgctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagagttaacacaaagaaaccttattaaagctcgtgacccagggcacactttgatgctcc 860

                   
Query: 661 tgattcaa 668
           ||||||||
Sbjct: 861 tgattcaa 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no490_a03.g1 MSMg01no490_a03.g1 CHROMAT_FILE:
MSMg01no490_a03.g1 PHD_FILE: MSMg01no490_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:27 2005
         (602 letters)



>mm_chr9_60064135_60065136
          Length = 1002

 Score = 1164 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttccccaagtggaaggcagcttaggtgccaagagatgaaaggatgggtggacaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atttccccaagtggaaggcagcttaggtgccaagagatgaaaggatgggtggacaggagt 582

                                                                       
Query: 61  ggtatggggatatggaggccacattggagaatgctgctcaggatgggaaaaagaaattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggtatggggatatggaggccacattggagaatgctgctcaggatgggaaaaagaaattaa 522

                                                                       
Query: 121 agccactgcttcctgtgcctcattcatgagtgccttgctagccctgggcccctggtccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agccactgcttcctgtgcctcattcatgagtgccttgctagccctgggcccctggtccct 462

                                                                       
Query: 181 cctgcattcacccctttccagccttgttgtgtcaccttctcctggaggtggagtctccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctgcattcacccctttccagccttgttgtgtcaccttctcctggaggtggagtctccgg 402

                                                                       
Query: 241 cttcctcaccatgtagcctaggtctcctcccagcctcctccttgcacctttggctgaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttcctcaccatgtagcctaggtctcctcccagcctcctccttgcacctttggctgaaag 342

                                                                       
Query: 301 tctcacaccagcatccctgaaactgctgtctttcctcccctgactccatccttcttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tctcacaccagcatccctgaaactgctgtctttcctcccctgactccatccttcttctct 282

                                                                       
Query: 361 ggctacttttccaaccatcaagataatcttcacttgagagctggactttgtaccttaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggctacttttccaaccatcaagataatcttcacttgagagctggactttgtaccttaaga 222

                                                                       
Query: 421 aagtgctactcagggctttaactttaattttttaaaccttgtttttaatgatggttctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aagtgctactcagggctttaactttaattttttaaaccttgtttttaatgatggttctta 162

                                                                       
Query: 481 aacactttaactttccttgtagcccaccaccctccagaggcagtggggaagaaaggatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aacactttaactttccttgtagcccaccaccctccagaggcagtggggaagaaaggatat 102

                                                                       
Query: 541 gggggaaatggacctgtttagaaatggttctttggagcaactcctgtctgtgttgtctag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gggggaaatggacctgtttagaaatggttctttggagcaactcctgtctgtgttgtctag 42

             
Query: 601 aa 602
           ||
Sbjct: 41  aa 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)