BAC Information

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BAC

Clone NameMSMg01-490G08
Chromosome9 (Build37)
Map Location 75,332,206 - 75,332,573
singlet/doubletsinglet
Overlap geneLOC100042070
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190
Downstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490G08.T7 (MSMg01no490_g08.b1)MSMg01-490G08.TJ (MSMg01no490_g08.g1)
ACCAG568641AG568642
length753752
length of high quality
(start - end)
323 (329 - 651)368 (339 - 706)
definitionCHROMAT_FILE: MSMg01no490_g08.b1 PHD_FILE: MSMg01no490_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:58 2005CHROMAT_FILE: MSMg01no490_g08.g1 PHD_FILE: MSMg01no490_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTATACAGAGG
CGCGGAATTCANAAAATTCCTAACAAATCGGTAACTTCNGNCAGTATGTG
CTGGGGACAGCATATAATGAATGACAGGGACTGCCTGCAGTAGGCTGGGA
TGGAGACATCTCAGTAGCCTGTGACAGTTGTTCCCATTTCTCTAAACCTT
AGCCCTGTACAACAGCTGTATAGATTTCATTTGTGCGTGGCTGCTTTTCA
GTTGTTCTTGGTGTGCATAATTTTTCTATTTTATCTGACTTTCTTACTTC
TTTCTCCTTCTGCTCTGATTANTTTGTGAAACTAGATGTTCCCTGATTCT
TAAAGAGTTAAAAATTGAGGCACCGGGCATAGCACAGCACAGTCCTAATG
GCCCAGGTGCATGCTGTAGGTTCTCATCTTGGAAACAACGCAATAACTGC
ACAATGGTAGTTCCAGATTAACGCTTGACTTGCAAAGAAAGTTTGAAGAA
ATGATTAGAAAATGAATAGAGCCAACATTGGAACCCCAAGAAAGAAATAA
ACGATTGAAGTTATGAAATAAGTTTTGTACAACATTTGAGAGTGGTTCCT
GGATAAGCAAGTATAGACTATGTAAAATCTTATATTAGTAAAACTAAGTC
AAAACACTGGGACTCTTCGGAGAGTTATTGTGTGCAATGTGCAGAAGCAG
AAAGCTAGTGGAACTACTGAGTTAAGGGTTAACGATTCTTTTTGGCCACT
GCC
CATTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGGGCTA
CATGGTNGAGAGCTCATTTCAAAACAAAACAAAACAAAAGATGCATAATA
CATACATACATACATACATACATACATACATACATACATACATACATGAA
ATGAAAATGGAATCTAGGGGTTTCTGCATAGCCCATCTCATTGCTTCATG
TAGGTCAAAGCGATTGTTCTGTCTTGGATAGACTTGATGGGCTAGGGATG
TACGTAAGTAGTAGGAAGCAGTTCAGCGCACTTTTTTCCGAGATTCAGTC
CCAGCACAAACAGGGATCTAACAACTTGACTGTACGAGACACCAGTGCAC
AGCTACATCTCAGCTCTCCTCTTTCTTCTTTGTCTTCTTCTGGAGGGTTT
GTCTCCTGGAGAGACATGAAGCACGGGTTATAGAATTCAATAGAAGGCAT
TCCTCGAAGCTTTGTCTACACTAGTTCTGAACTGGTGGGAGAAATCTGCC
ACAGAGACCTGTGTTCAGGTCACAACACCTGGGAAGACAGACCCCTGGGA
CCTGGCTGCCCTGGGTGGCTGTCACGGTAGGAGGGACACTTCATTCAGTG
CGGCATTTCTATCACATTACTTGAAGTACATTATTTTCTTTAAATGCTTC
TATAAATTCAGTGTTTTAAAGTCTGATTTTAGAGGCTGAAGAGATGGCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_g08.g1 MSMg01no490_g08.g1 CHROMAT_FILE:
MSMg01no490_g08.g1 PHD_FILE: MSMg01no490_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:58 2005
         (368 letters)



>mm_chr9_75332006_75332773
          Length = 768

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgagattcagtcccagcacaaacagggatctaacaacttgactgtacgagacaccagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cgagattcagtcccagcacaaacagggatctaacaacttgactgtacgagacaccagtgc 509

                                                                       
Query: 61  acagctacatctcagctctcctctttcttctttgtcttcttctggagggtttgtctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acagctacatctcagctctcctctttcttctttgtcttcttctggagggtttgtctcctg 449

                                                                       
Query: 121 gagagacatgaagcacgggttatagaattcaatagaaggcattcctcgaagctttgtcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 448 gagagacatgaagcacgggttatagaattcaatagaaggcattcctcgaagctttgtcca 389

                                                                       
Query: 181 cactagttctgaactggtgggagaaatctgccacagagacctgtgttcaggtcacaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cactagttctgaactggtgggagaaatctgccacagagacctgtgttcaggtcacaacac 329

                                                                       
Query: 241 ctgggaagacagacccctgggacctggctgccctgggtggctgtcacggtaggagggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgggaagacagacccctgggacctggctgccctgggtggctgtcacggtaggagggaca 269

                                                                       
Query: 301 cttcattcagtgcggcatttctatcacattacttgaagtacattattttctttaaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttcattcagtgcggcatttctatcacattacttgaagtacattattttctttaaatgct 209

                   
Query: 361 tctataaa 368
           ||||||||
Sbjct: 208 tctataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)