BAC Information

Click to search

BAC

Clone NameMSMg01-490G16
Chromosome9 (Build37)
Map Location 20,171,228 - 20,171,466
singlet/doubletsinglet
Overlap geneZfp560
Upstream geneOlfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18
Downstream gene4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490G16.T7 (MSMg01no490_g16.b1)MSMg01-490G16.TJ (MSMg01no490_g16.g1)
ACCAG568657AG568658
length6721,398
length of high quality
(start - end)		239 (76 - 314)---
definitionCHROMAT_FILE: MSMg01no490_g16.b1 PHD_FILE: MSMg01no490_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:00 2005CHROMAT_FILE: MSMg01no490_g16.g1 PHD_FILE: MSMg01no490_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCACTTTTACACCTAGGACCTACAGAGAGGATGCTATTTCAA
GAAAAGGTGAAAGGATAGCTATGGAAATGGATTACAAACACTAGACAAAC
TATACAGGACTAGAGCCCAATCATAATGAGGACCATTGGAAAATTCCACA
AGACTCCTCCCCTCCTAGAAGAGAAAGGCCATGTAGCACTTAGGCACCCC
TCCACTCCAGAAAGGAAAGGCTTAATTACATTCCTCAGACCACAGGGGTT
GGGGGAAGTGGAGGGAAGAGAGTTTATTCTNACCACTGGGCCACCTTTCC
GGGGGGGGGGAAAGGGCCCCCCAAAAAACTCTTTTTTTAAAGCCTCTTTT
TTTTTATTTAAGGGGTGGGGGGGGGAAGAAACGCCGTTGTTGCTCTGCCC
CTCCCCAAGGAGAGGGAGTAGGGTCCCCCTCCCCCTATTTTTTTTTATTA
TTTTCACCCCTCCTTGTCGTTTTGTGTGGGGTGGGTGNNNTGTTGGNCCC
TCCCACACTCTCTCGAATTACTTAATTATTTATATTCCAGATTTTATTGC
NATGTAATATCGGCTCGNNNNNCCAANAATATTTNNTTNNNNNNCCCCCT
ATTTCTTTATATTTTTAAGTAT

CACCTATCTCTCTACCCACCGTGTATTAGGCACATCGGTTGTTGTACGGC
CCGCCGATGTCTCTTTCTCCCTATATCTCATGCGTTGTCGCGCGTATNGG
TGACAGCGTATTATAGTCTGTCTAACTTACAATAGTCTAGTGACCGCCGA
GCAGCTATACAGACTACTATGAAATATGTCGCCTTGCTAGATCATATCAC
TGCTTGTAGTCATCTACAGCAGGTGTCTTTCGTATCTCCTGCACGCGTAG
CTCGAGTNTAGATATATATATAGTTAGACATATGTAGTGATGACATAGAT
ATACTTAGTTCATGTTACGCACAGGTGTCTCATCATGTAGATACTGTCTG
CTAATGATCTATCGAGACTTATTCGACTACACACCACTTTTGGGTATTGT
GCTTGCAGGTCTGTCTATCTGCCGTATATCAAATGTCTGAGAACGCGCAC
GTCACATGCGGATGTACACTCGTCACTGTTCATAATGCAGTGTGCAGCGT
ATGTTCCTTATCAATAGGAGCGCCGTGCGTGTCTNACTCAGTAGCTACTA
ATACGTATTGTTCCTGCGTTGTAGATTATTCGTTGACATGTTGCTAGGAG
TCGACGCTATATATCCTCAACNTTCGTAGTATTTACTTATATCGTGAGAT
GTGATGATAATTTACAACTCTATCGTATGTCTGCACGACGTGTATATTCC
TTCATGTCTCTAATATACATCTCTCGCTCCTCCACCGCGCGCTTATTATT
ATATAATTGTTTACGAAAAACACGCAGCTGTCCACACATTGCTCCCTCGA
GCTCTGTATATTGTATCTTCTCTCGTTCACGAACGTCATGCACTATCACT
TATTGTGTCGCCGAATGCTGTGGTACATGTTGTGTGATATCATATTATAC
CTAATTCANGAGTAGTATGTCCGTCNCACAGCCTACTATAGTATATATAT
CGTCACGCCGCTCACTGTATATATGGATGTTGTTCCTCGTTCGGCGATAC
TAACGTCCTTATTTTGTGCCCTGAGGCGGTGCTTCATGCATGCAATTCAT
CTCTCACAGCCTACTCCTCAACTGTCTTTGCATTAGCTAGACTTCGACTA
CATCTTCGATGTCACCTCATACGCTTCCTATTCTGTTGTCTTNGCGCATG
ATAGACTACACAGCTTACTGTCTGAATATGGTATCAACTGTTATTTTNTA
TCTGCTGTCTTTCATACACACACATCTCATCATCGTTGATATTTACGCCT
CTATATACGCTGTCTCATCTACATGTATATTGACTNCGCGACTGTGTATT
ATAGTCTTACTCTCTCACATGAACAGTGTATGACTCNAACTAGCGACTTA
TAGCGCACTCGTCTATGTCTACTCCGTACGTGCATATCTTTCTGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_g16.b1 MSMg01no490_g16.b1 CHROMAT_FILE:
MSMg01no490_g16.b1 PHD_FILE: MSMg01no490_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:00 2005
         (239 letters)



>mm_chr9_20171028_20171666
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctacagagaggatgctatttcaagaaaaggtgaaaggatagctatggaaatggattac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctatagagaggatgctatttcaagaaaaggtgaaaggatagctatggaaatggattac 260

                                                                       
Query: 61  aaacactagacaaactatacaggactagagcccaatcataatgaggaccattggaaaatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aaacactagacaaactatacaggactagagcccaatcataatgaggaccactggaaaatt 320

                                                                       
Query: 121 ccacaagactcctcccctcctagaagagaaaggccatgtagcacttaggcacccctccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ccacaagactcctcccctcctagaagagaaaggccatgtagcacttaggcagccctccac 380

                                                                      
Query: 181 tccagaaaggaaaggcttaattacattcctcagaccacaggggttgggggaagtggagg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tccagaaaggaaaggcttaattacattcctcagaccacaggggttgggggtagtggagg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |