BAC Information

Click to search

BAC

Clone NameMSMg01-490J02
Chromosome9 (Build37)
Map Location 31,581,409 - 31,581,727
singlet/doubletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490J02.T7 (MSMg01no490_j02.b1)MSMg01-490J02.TJ (MSMg01no490_j02.g1)
ACCAG568772AG568773
length7511,111
length of high quality
(start - end)
319 (325 - 643)---
definitionCHROMAT_FILE: MSMg01no490_j02.b1 PHD_FILE: MSMg01no490_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005CHROMAT_FILE: MSMg01no490_j02.g1 PHD_FILE: MSMg01no490_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGAGAGGGAGGCGC
GGAATCNGNANGTGACTACAGAGAGGGATTTAATATGGGGAGGGGGCATC
CACACAACCATAAATATGTCCTTGAGAGCCTAAAGGTTCTCCATGACCCA
GAACCCTGGGACATAATTAGTAAAGAGCCTGGTGTTGCAGCAGCTGCTTT
TGTAGGCTAAGGACGAATGTGGAAAGTGTGGGTATGGAATTTTTCTCTTT
GAATAAATGGGGTTGAGGACACTATGCAGAGGCAGGGGTCAAGTAGAGCA
AGCAGTTAACCAGCAGATATTATTTTGGCCAAAGTTTTAGTTGAGCTTAG
TGACAAGCAATGAGGAATTTGATTTCTTCTGAGATGAGAGAATGGGGACC
AGATTTACCCTCTTACATGAAATATATAAAAAGCAACACAACATATAGAG
GCAATGGTTTAACATTGAAAATTAGATAGCAAAGGAAAGTAATACTGAGA
GAGAGGAGCACATGGTGGGGTCGGAGCTGATGGTGATGATATCGTCTTAC
AGGTCAGAAACGCTTCGAGAGAACTCTCCCTGTTTGCAGGGAAGGAGAAG
ATGGGATGATTTGGTGATGTTGGTGAGTTGAGGAGGCAACACTGGGAGAC
AGTTAAGAGGGACCATAGAGCTTACACAGCATAGGACTTTGAGGAAAAAC
TGTACAGAAAAAAGATCTGCAGATCTATTTATTCTTCACTACAACAAGGA
G
ATTTAACCCCCCGTTAGGAGAAGGNGGGGACCGGCCCGGCAAAGCCATAC
CACTTTTCCCTCAAAAGGGAGAATGGCGACCAGTCAACCCTTTTTCTCCG
CCCTATTTTNCTTCTTGTATAGAAGTGGTGCCTCGCCCGACCGCCCGTGC
ATACCCGTCTGCCACTCTTTATCTGCCTATCGCGCGCCGTCTAAAATCGA
AAATCTATTCTAAACAACCTTACAACTAGATAGCTCACAACCGGCGGTTT
TTCATCTTGGAGGGCGGCCGTTAAACACTCGTTTTTGCCAGTTTGCTCTT
CCCGAGCGTGTTTCGCGTTTACCCCGATTTATCCTTATTTCTAACCCTTT
TCGTTGTATAGGAGCACCCTACGAAAGGCTATTCAATAACCTTTTCTCCA
CCCCAATTATCTTCTTGTGTTCGCATATATATCCAAAGTGCTCTAGCTAT
CAAAAAAGGAAGAGAGTTGCTAAACATGGTTGTTTTAAATATTATTACGA
CGGATTGGAGAACCCATAATATCGAAACCGAGAAAGAGACTATGCGACGC
AGTGTTCCTTTCTTACGCTAGTGTGAAATAACTATGTCCCAGTTGAGAGG
GGCCATGTTAATGCTCTGTCAGTATCACCCGTCAGGTTACCCGGAACCGT
TCAACCCCCTCCTATAACGCCCGTCCGCCTCTATGTTATCCCCCCAACAA
AGTAGAGGATNTCACATAACTACATATTAATATACCACCGGAACCCGCGC
CCAAAATAAACCCCCCACTNTTANNNNNNGGACCGATCGCGAGACCTATA
TAAAAATNNNNNNCCGTNCCCANGGTAAGANTCCCTTATGGNCTTCTTCG
ACCCATNTTTAGGTATCTTATCTTAATAGAANGNACAAGANAANAANNAG
ACANANANNNNGNNTTTNGNCNNTNTCGGGTNCNNCNNAAACGNCNNNNT
TNNGGATNANNTNTTNNTNNGTACNNNANTCTTNNNNCTTNCNNACGGCC
CNNANCCNGTNNNANNCNNTTNNNTCGGNCNNNAANNNNTNNNNGANCNN
TTCCNNNNCNCNNCANCCGNTCTTCTNNTCNNTCGTNNTANTGCACTNNT
CCGGAGGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_j02.b1 MSMg01no490_j02.b1 CHROMAT_FILE:
MSMg01no490_j02.b1 PHD_FILE: MSMg01no490_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:11 2005
         (319 letters)



>mm_chr9_31581019_31581737
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggccaaagttttagttgagcttagtgacaagcaatgaggaatttgatttcttctgaga 60
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 709 ttggccaaagttttaattgagcttagtgacaagcaatgaggaatttaatttcttctgaga 650

                                                                       
Query: 61  tgagagaatggggaccagatttaccctcttacatgaaatatataaaaagcaacacaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgagagaatggggaccagatttaccctcttacatgaaatatataaaaagcaacacaacat 590

                                                                       
Query: 121 atagaggcaatggtttaacattgaaaattagatagcaaaggaaagtaatactgagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atagaggcaatggtttaacattgaaaattagatagcaaaggaaagtaatactgagagaga 530

                                                                       
Query: 181 ggagcacatggtggggtcggagctgatggtgatgatatcgtcttacaggtcagaaacgct 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggagcacatggtggggtcagagctgatggtgatgatatcgtcttacaggtcagaaacgct 470

                                                                       
Query: 241 tcgagagaactctccctgtttgcagggaaggagaagatgggatgatttggtgatgttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcgagagaactctccctgtttgcagggaaggagaagatgggatgatttggtgatgttggt 410

                              
Query: 301 gagttgaggaggcaacact 319
           |||||||||||||||||||
Sbjct: 409 gagttgaggaggcaacact 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)