NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAGAGTGAG
GCGCGGAATCACAAGGATTTCTCAACAGAGAAATTAGATTTTATATAGCT
TACAAGATTAGGATTCTAGTTGTTGTGCCCAGAGATTGAGTTACCATTGT
TNTCTGAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAGAAA
GGAAAGGAAAAGGAGAAGAAGGAGAAGAAGGAGAAGGGGAAGGGGAAGGG
GAAGGGAAAGGGAAAGGGAAAGGTATTTTTTTTTTTTNNANNAAANNGAN
AAANANAAGGGAAGGAGGAAGGTTTTTTTTTATCGGGAAGTGTTTGGGTG
GGTGATGTGTTATTGTTTTGTGATTAAGAATGGTATGAACCCCCAGTTTT
TTTTTGTTGCGAAAATTTGGTCATTAAGGAAGTATTTGGCATCGAGTTTG
AGGATGGTTATTTAAAATGGTGAAAGATTTAGTATTTTAGTCGAGGGACG
TTAATCATTTATATATATATAAACGTTTTTCGATGTTTCGTCTAATGAAT
CTAACTGTTGCGTTGTTTGTGTGTTGTTAGTGTGTTTTTGTTTGTTTATC
TCATGTAATTGTTACGCTTCTCTAATTTATTTTTTCATGATATTTCTATA
TTAAGAGCGCCAAGTTGTCTTTTTTTTTATTTTTTTAGGTTTAGTGTATA
GAATGAATGTTGCGGTACCTCATTATTCGTTGTTTGTATTTTTTTTGTGT
TCGATTTTGGTGTCCTTTGTATCTGGGGTTATGTGCTAGCCCTCTTTTT

NCCGATGCAGTGGGAGGCCTGGNGGNCGCCTGGTTCAAACACGGGGGTGA
ACTATAGAAGTACAGAAAAAGGCTCCATCTAGTCTGTGCAATGCTCTGTT
TTATGTGTTGCCAATCAAAGGTAACTATAAAGTTGATAAAATTCAGGAAT
ATCCATACTTGTGTTAGTAAGCCAACTATTTTTTTTAAAACCTTTGATCT
TTCATATCAGAGCACAACTGGAAGGCTCAAACATTTTAATGTGTAGATAA
ATGAACCTACCTTTATCTTCTTAACCAGCTTATTCTCTTCTTCATCATCT
GTTTCTGGAAATTTANATANTTTAATTTTATGTTCTTGAATTTCTTTCAT
TATCTAAAGCAGAAGGAGGGAAATGGCGCCACACATAATTATGACATTTG
CAGTATTTCTACTAAATCTTTCTTGGATTTTTTTTTTATTTAAATGAGAC
CTCTGGTGCTTTCTTGTCCGTATTTAAATACAAAAACCTATTACAGGGGA
ACAAAGAAAGTAAAGGTGCCTACCATGCAAAGTAGAAAGAGAAAAAGCAG
AAAGAGAACCGATTCTACAAAATTCTTCTCCGATCTCCACAGGGATGACA
GGGCATGCACCTTCCTCCCTTCCTTAACCCATATGCGCACAGACAAAGAG
TGGAATGAAATTTAAAATATTTTAAATTCAATTATTTCAGAAGTGTGAAT
CATATGGGTGTTGTCCCGAAATGAATTCAAAATAATGACAGAATATTTTA
C

Query= MSMg01no490_o13.g1 MSMg01no490_o13.g1 CHROMAT_FILE:
MSMg01no490_o13.g1 PHD_FILE: MSMg01no490_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:38 2005
         (431 letters)



>mm_chr9_25103475_25104306
          Length = 832

 Score =  750 bits (388), Expect = 0.0
 Identities = 421/432 (97%), Gaps = 1/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaattttatgttcttgaatttctttcattatctaaagcagaaggagggaaatggcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttaattttatgttcttgaatttctttcattatctaaagcagaaggagggaaatggcgcc 479

                                                                       
Query: 61  acacataattatgacatttgcagtatttctactaaatctttcttgg-attttttttttat 119
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 478 acacataattatgacatttgcagtatttctactaaatctttcttggttttttttttttat 419

                                                                       
Query: 120 ttaaatgagacctctggtgctttcttgtccgtatttaaatacaaaaacctattacagggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttaaatgagacctctggtgctttcttgtccgtatttaaatacaaaaacctattacagggg 359

                                                                       
Query: 180 aacaaagaaagtaaaggtgcctaccatgcaaagtagaaagagaaaaagcagaaagagaac 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 358 aacaaagaaagtaaaggtgcctaccatgcaaagtagaaaaagaaaaagcagaaagagaac 299

                                                                       
Query: 240 cgattctacaaaattcttctccgatctccacagggatgacagggcatgcaccttcctccc 299
           ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 298 cgattctacaaaactcttctccgatctccacaaggatgacagggcatgcgcctccctccc 239

                                                                       
Query: 300 ttccttaacccatatgcgcacagacaaagagtggaatgaaatttaaaatattttaaattc 359
           ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 238 ttccttaacccatatgcacacagacagagagtggaatgaaagttaaaatatttcaaattc 179

                                                                       
Query: 360 aattatttcagaagtgtgaatcatatgggtgttgtcccgaaatgaattcaaaataatgac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aattatttcagaagtgtgaatcatatgggtgttgtcccgaaatgaattcaaaataatgac 119

                       
Query: 420 agaatattttac 431
           ||||||||||||
Sbjct: 118 agaatattttac 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space:   347306
Effective search space used:   347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)