BAC Information

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BAC

Clone NameMSMg01-491A13
Chromosome9 (Build37)
Map Location 62,409,885 - 62,410,401
singlet/doubletsinglet
Overlap genenone
Upstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
Downstream geneItga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A13.T7 (MSMg01no491_a13.b1)MSMg01-491A13.TJ (MSMg01no491_a13.g1)
ACCAG569123AG569124
length7491,573
length of high quality
(start - end)
572 (61 - 632)---
definitionCHROMAT_FILE: MSMg01no491_a13.b1 PHD_FILE: MSMg01no491_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:48 2005CHROMAT_FILE: MSMg01no491_a13.g1 PHD_FILE: MSMg01no491_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCACATAGTCAGAAAATGGGCGGAATTCCGGGGAGATT
CTTTATACATGCATCCTCACGCACTCCTGATCATCATTCCGGCCCCCACT
CCCTCAGTGCCACCACAGAACCTCCAAGGGAAAGCCACATCTTTCAGGGC
TCTTGTTCGTTTGATCAGGACACCGATTCTAAAACAATCAGATTTGCACA
CCTGGAAGCATGTAGGCCAAGCTGTGCTACCAACCCCACAGTATAAGACT
CCTTCCTGGCTCATGACCTGTCCAGTGCATGCAGAGGGACAGACACTCAT
TTGATTCTTTTTTCTACTCGAGGCTCCACCCAAATACCAGGTTTTATAGA
TGCAAGCTGAATAGCCATAGAAACTGGGCAGTGACTCTGAAAGCTGCTGT
CCCAAAGGGGCATTGGACACCTCTGATCATATTTCATTGGTCAGTGCAGG
TCACGTGAGTAGAGATGTGGGCTGCTTCTGTGGGTCAAGGTAAAAGAGGA
AAAAAAAATTCAGTATGTTATTGAGCATTGGAAATGGGGGCATTTCTATG
CCATGGCCCGCTTGTGGAGGTCAGAGAACCACTTGCAGGAGTCAGTTCGT
TCTGTTCACCATGCTGGGGCTTAAACCCGGGTCATTATGCAGTAAGTACT
TTTGACTGATGAGCCATCTCTCCAGCCCTGGACAGCTATTACTGGGAAAA
TGTTTCTTGACCAACATACTTTAGAAAGAAAGGGCTAATTGGGGGGGGG
TAGAATGTGTTNGTGNGTTAGTGNNGGGNGAGATACTCTCTACGACATCG
TACACGCGCGTGACGAGGANAGGTATAGTACGTGCAGATCTGTTCTGCAT
CAGNTAGCGACGCTGACGACCAACGTGCGCGCGTGCGAGACGACGGAGCG
ANGACGCGAGNCCGTGTGGCGTGTATATGGAAGATGTGATGATCGTAGCT
ATTCGATGTGCGCGTAGTGACTAGCATGTAGATCGCGCCGTGTGCATCGT
TTGCATGCTGAGACNGATCTCGCGTGCTATANTAATATNATCGACTCGTA
TCCGCGTCTGAGTAGCCGTCTTGTCTAACCGTGAGCGCACTACGTGCGGA
TCAACTCACTCGTGTCGCTCGCGTCTCGGCGTACGTCATGAGCATGCTGC
GTATGTGTGAATGACTATGCTATACAGCATGTGCGTGCCGGCGCAGTCTC
GTGGATTGATGCATGCACGACTCTGCTCCCAGCNCGAACGTATAGGGATG
CGCATCACACAATCTANACACACATATATANATATCACACATACNTGTCT
ACACATGTATATTGGAGTTGATGATATACGCTCTACCATCACGATCATGA
CCTCACGCGACTCACAGCGCTAGCATGTAACGATCAGGCTGTCAGACTAC
GTACATACACTCTTCATGCTCTCCTAATCGATAATATATTCATCCGGTCC
ATGAACACGACACGCNACCAACGCAAAAANATGATAACAGCTACTCATGA
GTATCTGCTACTGATACAGTACGTGTGTGTATATGTAGATATGAGCATTA
TGATCTACAGGTACACGTGAGGAGTGTATATCTAGANCTCGATCGACTCT
TCATACGACANTCTGGACAAGATTAGTCGCACTTAACTGACACATCACTC
GATGCTAGACTACTCTACTCTCTCACGCTCAATTATCGTCACATACACGC
GTGCATGCNTCTCACTGATGGCGACACTACAGTGGCTGATGCGCTGCTAT
CTGTGACTTCGCGATAGNTGCGAGCTATCTGATACGTCGANATATATAAC
AGTCCCGTCATCTCACNTACGATCTAGATCAGAATCCGCATCGCGAGGCA
GGTAATCACTCGTCGCAGCGTTCAGCAAGCTNCCTCTCAGCTGACGATAC
GTCGGATCGCCTCGNGCGTAGCNTAGTACACGCACGATCGCGAGGCCACT
GCATGTCGACGANGATGGAGTGAGCTGAGCATTATGTACACTATATTCTG
CTTGCTCTCTGATAGTACTATACATACATCGTTGTCAGTATGTACTACAT
GAGTTATATNTGCATATGNCACTATAATTATGTTGCCCNANCGCGCGCAG
CGTAGCGTCAGCAGAGTATTANATAGACTAGATATGATGTACATACATAG
TAGATATGAACTTGATTACTACAGCGATGATGATGCGTGACTATGCAAGC
TATCTCTAGTCACTTGTGCCAGGGAGTCAGATCAGATCAGTGCGAGCAGA
GAGACGCANCGCTACGCTACGGCGATGCAAATACGNCGCGTCGACGNACT
ACTTAGTGCTCATAGAGGCGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a13.b1 MSMg01no491_a13.b1 CHROMAT_FILE:
MSMg01no491_a13.b1 PHD_FILE: MSMg01no491_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:48 2005
         (572 letters)



>mm_chr9_62409885_62410855
          Length = 971

 Score =  932 bits (482), Expect = 0.0
 Identities = 509/522 (97%), Gaps = 9/522 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatcctcacgcactcctgatcatcattccggcccccactccctcagtgccaccacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcatcctcacgcactcctgatcatcattccggcccccactccctcagtgccaccacagaa 458

                                                                       
Query: 61  cctccaagggaaagccacatctttcagggctcttgttcgtttgatcaggacaccgattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cctccaagggaaagccacatctttcagggctcttgttcgtttgatcaggacaccgattct 398

                                                                       
Query: 121 aaaacaatcagatttgcacacctggaagcatgtaggccaagctgtgctaccaaccccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaacaatcagatttgcacacctggaagcatgtaggccaagctgtgctaccaaccccaca 338

                                                                       
Query: 181 gtataagactccttcctggctcatgacctgtccagtgcatgcagagggacagacactcat 240
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 337 gtataagactccttcctggcccatgacctgtccagtgcatccagagggacagacactcat 278

                                                                       
Query: 241 ttg--attctttttt--ctactcgaggctccacccaaataccaggttttatagatgcaag 296
           |||  |  |     |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgacaccc-----tagctactcgaggctccacccaaataccaggttttatagatgcaag 223

                                                                       
Query: 297 ctgaatagccatagaaactgggcagtgactctgaaagctgctgtcccaaaggggcattgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctgaatagccatagaaactgggcagtgactctgaaagctgctgtcccaaaggggcattgg 163

                                                                       
Query: 357 acacctctgatcatatttcattggtcagtgcaggtcacgtgagtagagatgtgggctgct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 acacctctgatcatatttcattggtcagtgcaggtcacgtgagtagagatgtgggctgct 103

                                                                       
Query: 417 tctgtgggtcaaggtaaaagaggaaaaaaaaattcagtatgttattgagcattggaaatg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tctgtgggtcaaggtaaaagaggaaaaaaaaattcagtatgttattgagcattggaaatg 43

                                                     
Query: 477 ggggcatttctatgccatggcccgcttgtggaggtcagagaa 518
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ggggcatttctatgccatggcccgcttgtggaggtcagagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)