BAC Information

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BAC

Clone NameMSMg01-491C14
Chromosome9 (Build37)
Map Location 96,203,321 - 96,379,347
singlet/doubletdoublet
Overlap geneTfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream geneLOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491C14.T7 (MSMg01no491_c14.b1)MSMg01-491C14.TJ (MSMg01no491_c14.g1)
ACCAG569221AG569222
length737748
length of high quality
(start - end)
534 (61 - 594)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no491_c14.b1 PHD_FILE: MSMg01no491_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:59 2005CHROMAT_FILE: MSMg01no491_c14.g1 PHD_FILE: MSMg01no491_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(96,378,814 - 96,379,347)(96,203,321 - 96,203,557)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAACAATCCGCGGAATTCTGTCCCT
ATTCCTGATAGTTTTACATTTGGGAGAAAGGAGACAAATGAAGACAGGGA
CGATGTGATTTCTGAGACTCCCCCGAGTTTAATACAATGTAACTCCAGAC
AATGCTCGCTTACTGACCCGGGCCTGCCCTACAGCAACTGGCCTTTGGCC
ACTTTAGCAAGCGCTGGGATTCTCTGTGCAGGCCTTGCCCAGCCCCTCGT
GACGTCACTGGCTCGCGCCATCCAATCATCGCCGTCTGGCTCCGCCCGCC
CGCCCGTGTCTGCGGGAGGCTCCGTGGCGTGTGTTGTGGCCCCGCTGAGC
CACCGTACCTCCCGCCTCCGCGCCCAACGTCCGCGTCGCCGTTCTGCGCC
GCCGCCATGGCCGACGTGGAGGACGGCGAGGAACCCTGCGTCCTTTCTTC
GCACTCCGGGAGCGCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCTC
TCAAGAAGTGGAACGCGGTAGCCATGTGGAGCTGGGACGTTGAGTGCGAT
ACCTGTGCCATCTGCAGGGTCCAGGTGATGGGTAAGCGATGCAGGCGAAG
CCGGGACCGCGAGCTGGGCCGAGCCAGCGAGTGCTGGGCCGGGCCGGGCC
GCCAGACACGGGATGGTTCCTACGGGGGCGGGGGGGGGGCGTGACCGGGA
TACCCGAGGGGAACCTCCGGCCCAGCGGCCCACAAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGTAGGCCACCTGGAGGGGCATCTCCAGCCTGTTCACA
GAGGACAGTTAGTACTGTCTAATCTGTCCCAGGAAGGGGCTAGTTCAGGT
ACAGGGATTTCTGCACTGCCGGTGGCTCAGGCTCATGCCATCTCCTAGTT
CTCTCCTGTAGTCTGATTATGTAGGGCCATATCACCCTTTTGTCCCAGGC
CGCGTATTTTTGATGCCCTCATCCCTAAAAACACTTGGTTTGCCATCTAT
TTTCTTGCTTGTATATGTATCAGACAGAGAGGATGGCTCCTCAGTAAAGA
ATGGCTTAAAGCCACTGCTGGTGTGGCAAGAATTATCTAATGGGGAGAAA
AATGGCCGTTGTCCCAAGGATCATCAGAGAAGAAAAGTTTGTAGTGCAGC
AATTCTAAGGACATGGCTGTAATCATCCCTGTGTTAAAGTGAGCAATGCG
AGACAGGAATGTCCTCATACAAAAGGACTGCCAGACAGGGGTGCAGTTAG
TAGAGTGCTTGCTTAGCTTTTGCCATGCACAAAGCTCTGGGTTCAGTCCC
CAGCAGGTTCAGTGGTACATACCTATAGTCCTAGCACTTGGGAAGTATAA
CAGTAGAATCAGACGTTCAAAGCCATATACATAGCAGGTTCAAGGCCATG
AGACCCTATCCTAATCAATAATAAAATAGAACAGGGCTTTCACATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_c14.b1 MSMg01no491_c14.b1 CHROMAT_FILE:
MSMg01no491_c14.b1 PHD_FILE: MSMg01no491_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:59 2005
         (534 letters)



>mm_chr9_96378614_96379547
          Length = 934

 Score = 1002 bits (518), Expect = 0.0
 Identities = 530/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttacatttgggagaaaggagacaaatgaagacagggacgatgtgatttctgagactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gttttacatttgggagaaaggagacaaatgaagacagggacgatgtgatttctgagactc 675

                                                                       
Query: 61  ccccgagtttaatacaatgtaactccagacaatgctcgcttactgacccgggcctgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccccgagtttaatacaatgtaactccagacaatgctcgcttactgacccgggcctgccct 615

                                                                       
Query: 121 acagcaactggcctttggccactttagcaagcgctgggattctctgtgcaggccttgccc 180
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 614 acagcaactggcctttggccactttagcaagcgctggggttctctgtacaggccttgccc 555

                                                                       
Query: 181 agcccctcgtgacgtcactggctcgcgccatccaatcatcgccgtctggctccgcccgcc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 agcccctcgtgacgtcactggcgcgcgccatccaatcatcgccgtctggctccgcccgcc 495

                                                                       
Query: 241 cgcccgtgtctgcgggaggctccgtggcgtgtgttgtggccccgctgagccaccgtacct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cgcccgtgcctgcgggaggctccgtggcgtgtgttgtggccccgctgagccaccgtacct 435

                                                                       
Query: 301 cccgcctccgcgcccaacgtccgcgtcgccgttctgcgccgccgccatggccgacgtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccgcctccgcgcccaacgtccgcgtcgccgttctgcgccgccgccatggccgacgtgga 375

                                                                       
Query: 361 ggacggcgaggaaccctgcgtcctttcttcgcactccgggagcgcaggctccaagtcggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggacggcgaggaaccctgcgtcctttcttcgcactccgggagcgcaggctccaagtcggg 315

                                                                       
Query: 421 aggcgacaagatgttctctctcaagaagtggaacgcggtagccatgtggagctgggacgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aggcgacaagatgttctctctcaagaagtggaacgcggtagccatgtggagctgggacgt 255

                                                                 
Query: 481 tgagtgcgatacctgtgccatctgcagggtccaggtgatgggtaagcgatgcag 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgagtgcgatacctgtgccatctgcagggtccaggtgatgggtaagcgatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_c14.g1 MSMg01no491_c14.g1 CHROMAT_FILE:
MSMg01no491_c14.g1 PHD_FILE: MSMg01no491_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:59 2005
         (238 letters)



>mm_chr9_96203121_96203758
          Length = 638

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaggggcatctccagcctgttcacagaggacagttagtactgtctaatctgtccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaggggcatctccagcctgttcacagaggacagttagtactgtctaatctgtccca 260

                                                                       
Query: 61  ggaaggggctagttcaggtacagggatttctgcactgccggtggctcaggctcatgccat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggaaggggctagttcaggtacagggatttctgcactgccagtggctcaggctcatgccat 320

                                                                       
Query: 121 ctcctagttctctcctgtagtctgattatgtagggccatatcacccttttgtcccaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctagttctctcctgtagtctgattatgtagggccatatcacccttttgtcccaggcc 380

                                                                    
Query: 181 gcgtatttttgatgccctcatccctaaaaacacttggtttgccatctattttcttgc 237
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 acgtatttttgatgccctcatccctgaaaacacttggtttgccatctattttcttgc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)