Query= MSMg01no491_f07.b1 MSMg01no491_f07.b1 CHROMAT_FILE:
MSMg01no491_f07.b1 PHD_FILE: MSMg01no491_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:13 2005
(624 letters)
>mm_chr9_77236296_77237319
Length = 1024
Score = 833 bits (431), Expect = 0.0
Identities = 487/523 (93%), Gaps = 27/523 (5%)
Strand = Plus / Minus
Query: 129 gctctggatgctgtgcaggttgagcggattggggggactgcctagttttgagatgatata 188
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1024 gctctggatgctgtgcaggttgagcggattgggggtactgcctagttttgagatgatata 965
Query: 189 gttaatttccatcagttgtaaaagcagtctcaagttctgggctcttgagagaaaatactc 248
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gttaatttccatcagttataaaagcagtctcaagttctgggctcttgagagaaaatactc 905
Query: 249 agagaagccttttaaaaaatttttgtt---------------------------ttatta 281
||||||||||||| ||||||||||||| ||||||
Sbjct: 904 agagaagcctttttaaaaatttttgttttattattattattattattattattattatta 845
Query: 282 ctattattattattttttaacccctgacttttaccacagggtccagtggcatatactcat 341
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 844 ttattattattattttttaacccctgacttttaccacaaggtccggtggcatatactcat 785
Query: 342 tctccaagttatgcggtgtggacatctaaaaagtaacaccgatgcaatgatcccacgtag 401
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 784 tctccaagttatgcggtgtggacatctaaaaagtaacgccgatgcaatgatcccacgtag 725
Query: 402 tccttgctgattcttgtcacaggaagaaatcaaacaccagcaaagtccatgagtcagcaa 461
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 724 tccttgctgattcttgtcacaggaagaaatcaaacaccagcgaagtccatgagtcagcaa 665
Query: 462 atatgcagtgacccagcctgggtccagtgtctcctcagctgggtggttttctgttcttcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atatgcagtgacccagcctgggtccagtgtctcctcagctgggtggttttctgttcttcc 605
Query: 522 ctttgacgttgtatgtgaaatgtgggtggaaagttctgacgagatgtttttgtcttttta 581
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 604 ctttgacgttgtatgtgaaatgtgggtggaaagttctgacaagatgtttttgtcttttta 545
Query: 582 agggtccctcgctgaaacatcaagttgctcaaaggaaagtaag 624
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agggtccctcgctgaaacatcaagttgctcaaaggaaagtaag 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f07.g1 MSMg01no491_f07.g1 CHROMAT_FILE:
MSMg01no491_f07.g1 PHD_FILE: MSMg01no491_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:13 2005
(611 letters)
>mm_chr9_77074040_77075050
Length = 1011
Score = 1147 bits (593), Expect = 0.0
Identities = 605/611 (99%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 1 ccattttccaaaggggaaaattgtctcaaacaatgcagaagttagccaaagaatactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattttccaaaggggaaaattgtctcaaacaatgcagaagttagccaaagaatactcag 260
Query: 61 ggagctgtccattctgtccagggccatgaacacaaaccagaatatttcataataaagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagctgtccattctgtccagggccatgaacacaaaccagaatatttcataataaagcaa 320
Query: 121 cacctaaaattagcatgtcagttatcccatattaatgaaatacaagttggacaacgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctaaaattagcatgtcagttatcccatattaatgaaatacaagttggacaacgacaa 380
Query: 181 aggggcttcaaacatttttaaatctaaatttagctacacattccaatctattttaatatc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aggggcttcaaacatttttaaatctaaatttagctatacattccaatctattttaatatc 440
Query: 241 aaaggacagttaggtagaacccagattttgaactgatttcttttaagcattactgtttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggacagttaggtagaacccagattttgaactgatttcttttaagcattactgtttca 500
Query: 301 gtttgttgagtacctgtgtttgaggaccccctatctatttggtgcataaagcttaaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgttgagtacctgtgtttgaggaccccctatctatttggtgcataaagcttaaataa 560
Query: 361 atctgaacatttatccatttatttgtttgtttatttatttatttatttatttacttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 atctgaacatttatccatttatttgtttgtttatttatttatttattta----cttattt 616
Query: 421 atttgcttatttacatatttttacttctttgatcattttgtaccaccctggaaggactga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atttgcttatttacatatttttacttctttgatcattttgtaccaccctggaaggactga 676
Query: 481 ggcaagaaacaactcacaaaagcaaataaattctttgatatctcagagcttttgtctact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggcaagaaacaactcacaaaagcaaataaattctttgatatctcagagcttttgtctact 736
Query: 541 tcatcctttccttctgtgaaaaattgcaccaatttaaacaaaacagtcagatacaaaaac 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcatcctttccttctatgaaaaattgcaccaatttaaacaaaacagtcagatacaaaaac 796
Query: 601 aaaattggggt 611
|||||||||||
Sbjct: 797 aaaattggggt 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
