Query= MSMg01no491_f16.b1 MSMg01no491_f16.b1 CHROMAT_FILE:
MSMg01no491_f16.b1 PHD_FILE: MSMg01no491_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:15 2005
(672 letters)
>mm_chr9_116049400_116050471
Length = 1072
Score = 1185 bits (613), Expect = 0.0
Identities = 657/672 (97%)
Strand = Plus / Minus
Query: 1 gaaggcagnctacaagtggcttatttatcaatctttaacttggacattttaaccagacat 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaaggcagtctacaagtggcttatttatcaatctttaacttggacattttaaccagacat 813
Query: 61 tgagtttatacaaatcttttgacagaatagtgaactgtgctattcagatggacacaatat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 812 tgagtttatacaaatcttttgacagaatagtgaactgtgctattcagatgaagacaatat 753
Query: 121 gggtggggctctgatggacacaatgtaggcggggctctggtcttggctattctgcttctc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gggttgggctctgatggacacaatgtaggcggggctctggtcttggctattctgcttctc 693
Query: 181 ttaggagcttttcctgtttccttccagtcttcttgccttttgtaactgacttgtcccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttaggagcttttcctgtttccttccagtcttcttgccttttgtaactgacttgtcccaga 633
Query: 241 gccaatcctatgaatagtggacaaccctaaagcaccaggatggcctccaggagagcgaca 300
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 632 gccaatcctatgaatagtggacaaccctaaagcaccagaatggccttcaggagagcgaca 573
Query: 301 aggcctgctggggattgtcacccaaggacccagctagacaagatgccccagaagaacttg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aggcctgctcgggattgtcacccaaggacccagctagacaagatgccccagaagaacttg 513
Query: 361 cctttgcctttgggtgaagttgctggatccgcccactgcccagacttgccataagcataa 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 512 cctttgcctttgggtgaagttgctggatctgcccactgcccagacttgccataagcataa 453
Query: 421 ggatacccagcacatgagcaccgtccaaggaatagaagcttcctgcagcagagaggcggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggatacccagcacatgagcaccgtccaaggaatagaagcttcctgcagcagagaggcggg 393
Query: 481 aggtggggtggggaacacatcccgagggcctggggagctgtcctgtgcatgtgtcctctc 540
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 aggtgggatggggaacacatcccgagggcctggggaggtgtcctgtgcatgtgtcctctc 333
Query: 541 tgaaccccatctgcgtctgactgcttttcctgggtgcagtagctcagtagcttgggcagt 600
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgaaccccatctgggtctggctgcttttcctgggtgcagtagctcagtagcttgggcagt 273
Query: 601 ccagctttgggccactctgcagtcctgttcgtgtgggccttgtacttgctgctgtgacag 660
|||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 ccagctttggaccactctgcggtcctgttcgtgtgggccttgtacttggtgctgtgacag 213
Query: 661 ggcagtgaatct 672
||||||||||||
Sbjct: 212 ggcagtgaatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f16.g1 MSMg01no491_f16.g1 CHROMAT_FILE:
MSMg01no491_f16.g1 PHD_FILE: MSMg01no491_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:15 2005
(623 letters)
>mm_chr9_115886995_115888017
Length = 1023
Score = 1106 bits (572), Expect = 0.0
Identities = 614/634 (96%), Gaps = 12/634 (1%)
Strand = Plus / Plus
Query: 1 ccccagagctcttgggtgagtgccacctggtcctagggattggagctgcgggcattccat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccccagagctcttggatgagtgccacctggtcctagggattggagctgcgggcattccat 250
Query: 61 gtgctttgcgcagaggagctggggtgctgcccactctcaggtcccatctctcctgcctgt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 251 gtgctttgcgcagaggagctggggtgctgcccactctcaggtcgcatctctcctgcctgt 310
Query: 121 ctatttctggagagccctgagggcgtgggaatctctctgatgttcttccaggtgaagaat 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctatttctggagagccccgagggcgtgggaatctctctgatgttcttccaggtgaagaat 370
Query: 181 tcgctcatcttggaagccagccttggtcagtctaaaattccaaccttcatctcaatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcgctcatcttggaagccagccttggtcagtctaaaattccaaccttcatctcaatgata 430
Query: 241 accatcatgattgactcttttttttactaagaaatagccacaaaataatttgaccttgtg 300
| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atcatcatgaatgactc-tctttttactaagaaatagccacaaaataatttgaccttgtg 489
Query: 301 cccttctcattgaaactgtcccagaaaaaggcttac------tttcttttcttttctttt 354
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 490 cccttctcattgaaactgtcccagaaaaaggctttcttttcttttcttttcttttctttt 549
Query: 355 c-----ttttttttttaaattcacagactaaatctttcttatcctacttggcgacaatcc 409
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cttttttttttttttttaattcacagactaaatctttcttatcctacttggcgacaatcc 609
Query: 410 tctaacacaggaagattatataagttaaaaatccaagaaaatgggaaacataaggggggc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctaacacaggaagattatataagttaaaaatccaagaaaatgggaaacataaggggggc 669
Query: 470 ataaaagaaagcctgggctgtaggtaatgatgaaaagatgcagtccataattagcatggc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataaaagaaagcctgggctgtaggtaatgatgaaaagatgcagtccataattagcatggc 729
Query: 530 acacctgcctctgtgggtaggctaaagcttgcttttagcctgtttcaaggattccaaatg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acacctgcctctgtgggtaggctaaagcttgcttttagcctgtttcaaggattccaaatg 789
Query: 590 tctgcctgcatttggctcttatttttctgttgcc 623
||||||||||||||||||||||||||||||||||
Sbjct: 790 tctgcctgcatttggctcttatttttctgttgcc 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
