BAC Information

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BAC

Clone NameMSMg01-491F21
Chromosome9 (Build37)
Map Location 74,174,303 - 74,335,779
singlet/doubletdoublet
Overlap geneNr1h2-ps
Upstream geneUnc13c, Wdr72
Downstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F21.T7 (MSMg01no491_f21.b1)MSMg01-491F21.TJ (MSMg01no491_f21.g1)
ACCAG569378AG569379
length739752
length of high quality
(start - end)		413 (323 - 735)641 (66 - 706)
definitionCHROMAT_FILE: MSMg01no491_f21.b1 PHD_FILE: MSMg01no491_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:16 2005CHROMAT_FILE: MSMg01no491_f21.g1 PHD_FILE: MSMg01no491_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,335,367 - 74,335,779)(74,174,303 - 74,174,940)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCGCGGAATTCAGAT
TTACATTCCAACAAAGAAAGCCAAGACAGAGAAAGGCAAGTTAGAAGTGG
TAAGCACGGGGCCTCCAAAGCCCCTGGGTAAGATGAGGGCATGACCTTAC
CTTTACCCTCTTGTCTATGAATTGCCTCATTGTCATTGTACCTCTGTCTT
CACTCCTATGGCCTCTGCTGCATGGTCAGGGTTAACTCAGCCTGGCACTG
ACGGATGCTGTGAGACTTACTCATCTCTGTGTGTCTTCCCATTCTCTTAA
AATATGGCTTTGCTGATTTTTTTAGTCTCTCAGGACCCACTCCATGTTTC
ATGACCCTAAACCCTGAACCCAAGTTCCTATCAAGAAGAGTTAATGGACT
ATGACCTGGGGTATGAATGTTCAGAGAACTGACCTATGGAAAAACCTGAG
TTTAGTTTTAGCTAGCGTGGCATATGTTTAGTCACATCTAGATTAATGGT
CAAGGAAGAGGCTTAGGCAGGGGTTATAAGGCTTAGAATGACTTAGTTGA
CAAGAGATTAGTCTAACTACACAGTCCACCCAAAGGCTGGAAACAGTATG
GTGGGGCAACTTATTCGATTTTGGTCAAGGCAGGTAGTGTCTTTCTCTCC
TCTTGGTCTTATAGTTTGATGTATTTAACTTTTTAAAAATTGATTCTTGT
TTAAGGAGAAAAAATTATGGAAGTTACAAGCTTTAAAAT

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCTGTTATCCCTTCCAGTGAAGTTTTCTCATCTA
TGAAAGCAGACTAAAAATGAAAATGTTTCTAAACTTCACAGTCCTATGCT
GGGCCAGCAAAATGACTTCCGTAGGTAGAGGTGTTTGCTGCCACACTTGA
ATGTGACATGAGGGACCCATGTGATAGAAGGAGAGAGACAACTTTTACAA
GTTGCTATTGGACCTTCACAATGAATTGTACCATGTGCATGCCACACAAA
CACATATGTACAAATAAATAAATGAAATAGAAATAACTTAAAGCATGATA
AGCTCAGTCTGTCTAAAAATGTAGAATTCATTTATCATGGGACTTCACCT
CAAGAAATGGCCAATGTATTCAGCCAATAATACCCTAAAAGGAAAATTAG
AGACTATAACACCAATAAACACTTGTAAGATAAATGATGAATAATATACA
AACATGGGGGAGGTCACTGATAATTGAAACAATTAGTGCTGGAAAATAGA
TTGGAATGCAGTCTTGGAAGGAAGGGAAAGCCATTTCCTGTCACAGTGTG
AGAGAGGCTGTACCCTAGAGTTCAGGAGGACATTCCACAAATATTTACAA
TACCCCATAACAGGTTCTGGCTATGATATATGTTATCCCTAATGCTATTT
TTTGAGCAATTTTTGACTGCTTCATTCTGTAGAATAGAAACTAATAACAG
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f21.b1 MSMg01no491_f21.b1 CHROMAT_FILE:
MSMg01no491_f21.b1 PHD_FILE: MSMg01no491_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:16 2005
         (413 letters)



>mm_chr9_74335167_74335979
          Length = 813

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtctctcaggacccactccatgtttcatgaccctaaaccctgaacccaagttcctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tagtctctcaggacccactccatgtttcatgaccctaaaccctgaacccaagttcctatc 554

                                                                       
Query: 61  aagaagagttaatggactatgacctggggtatgaatgttcagagaactgacctatggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagaagagttaatggactatgacctggggtatgaatgttcagagaactgacctatggaaa 494

                                                                       
Query: 121 aacctgagtttagttttagctagcgtggcatatgtttagtcacatctagattaatggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacctgagtttagttttagctagcgtggcatatgtttagtcacatctagattaatggtca 434

                                                                       
Query: 181 aggaagaggcttaggcaggggttataaggcttagaatgacttagttgacaagagattagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 433 aggaagaggcttaggcaggggttataaggcttagaatgacttagttgacacgagattagt 374

                                                                       
Query: 241 ctaactacacagtccacccaaaggctggaaacagtatggtggggcaacttattcgatttt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 ctaactacacagtccacccaaaggctggaaacagtatggtggggaaacttattcgatttt 314

                                                                       
Query: 301 ggtcaaggcaggtagtgtctttctctcctcttggtcttatagtttgatgtatttaacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggtcaaggcaggtagtgtctttctctcctcttggtcttatagtttgatgtatttaacttt 254

                                                                
Query: 361 ttaaaaattgattcttgtttaaggagaaaaaattatggaagttacaagcttta 413
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 253 ttaaaaattgattcttgtttaaggagaaaaaattatggaagttaccagcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_f21.g1 MSMg01no491_f21.g1 CHROMAT_FILE:
MSMg01no491_f21.g1 PHD_FILE: MSMg01no491_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:16 2005
         (641 letters)



>mm_chr9_74174103_74175143
          Length = 1041

 Score = 1226 bits (634), Expect = 0.0
 Identities = 637/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgttatcccttccagtgaagttttctcatctatgaaagcagactaaaaatgaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgttatcccttccagtgaagttttctcatctatgaaagcagactaaaaatgaaaatg 260

                                                                       
Query: 61  tttctaaacttcacagtcctatgctgggccagcaaaatgacttccgtaggtagaggtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctaaacttcacagtcctatgctgggccagcaaaatgacttccgtaggtagaggtgtt 320

                                                                       
Query: 121 tgctgccacacttgaatgtgacatgagggacccatgtgatagaaggagagagacaacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgccacacttgaatgtgacatgagggacccatgtgatagaaggagagagacaacttt 380

                                                                       
Query: 181 tacaagttgctattggaccttcacaatgaattgtaccatgtgcatgccacacaaacacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaagttgctattggaccttcacaatgaattgtaccatgtgcatgccacacaaacacat 440

                                                                       
Query: 241 atgtacaaataaataaatgaaatagaaataacttaaagcatgataagctcagtctgtcta 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atgtacaaataaataaatgaaatagaaataacttaaagcatgataaactcagtctgtcta 500

                                                                       
Query: 301 aaaatgtagaattcatttatcatgggacttcacctcaagaaatggccaatgtattcagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgtagaattcatttatcatgggacttcacctcaagaaatggccaatgtattcagcc 560

                                                                       
Query: 361 aataataccctaaaaggaaaattagagactataacaccaataaacacttgtaagataaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataataccctaaaaggaaaattagagactataacaccaataaacacttgtaagataaat 620

                                                                       
Query: 421 gatgaataatatacaaacatgggggaggtcactgataattgaaacaattagtgctggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgaataatatacaaacatgggggaggtcactgataattgaaacaattagtgctggaaa 680

                                                                       
Query: 481 atagattggaatgcagtcttggaaggaagggaaagccatttcctgtcacagtgtgagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagattggaatgcagtcttggaaggaagggaaagccatttcctgtcacagtgtgagaga 740

                                                                       
Query: 541 ggctgtaccctagagttcaggaggacattccacaaatatttacaataccccataacaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctgtaccctagagttcaggaggacattccacaaatatttacaataccccataacaggt 800

                                                 
Query: 601 tctggctatgatatatgttatccctaatgctatttttt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctggctatgatatatgttatccctaatgctatttttt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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