Query= MSMg01no492_k19.b1 MSMg01no492_k19.b1 CHROMAT_FILE:
MSMg01no492_k19.b1 PHD_FILE: MSMg01no492_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:58 2005
(602 letters)
>mm_chr9_23153334_23154335
Length = 1002
Score = 1120 bits (579), Expect = 0.0
Identities = 596/602 (99%)
Strand = Plus / Plus
Query: 1 tctagctgcattaaaggataacaagagtcctgtaatanaagcacacatttcactttttaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tctagctgcattaaaggataacaagagtcctgtaataaaagcacacatttcactttttaa 260
Query: 61 agcctagccttttcaatttctttatataggtgctttgtatctgagagccctcttcaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctagccttttcaatttctttatataggtgctttgtatctgagagccctcttcaaatg 320
Query: 121 ttatgttatatgccatagattactcatgtcaactgaatttatattggagatagaaagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgttatatgccatagattactcatgtcaactgaatttatattggagatagaaagagc 380
Query: 181 tcctggtatctttgaaagagtgaggaagacgttagcatatattgataaggaactgtcatt 240
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tcctggtatctttgaaagaatgaggaagatgttagcatatattgataaggaactgtcatt 440
Query: 241 ggcctccatctctggctaagtcctttaggtttaaatatggagagccttgctggggaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctccatctctggctaagtcctttaggtttaaatatggagagccttgctggggaaatg 500
Query: 301 actgggagggctagaagtgtctccatcatctgtttcatcctaccttctcagacaggtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgggagggctagaagtgtctccatcatctgtttcatcctaccttctcagacaggtggg 560
Query: 361 ggctgctgcacctctctgcaatggttttgaccataaaggacatttaaagggaaagtgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgctgcacctctctgcaatggttttgaccataaaggacatttaaagggaaagtgaat 620
Query: 421 acagtggcctactatgtccttggtgcggcctcacacagctctagagaacaccagcctact 480
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 acagtggcctattatgtccttggtgcggcctcacacaactctagagaacaccagcctact 680
Query: 481 tgtggcatgggtaaggggagcatgtcagcatgtgttactttctatagtgagacgaaatga 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtggcatgtgtaaggggagcatgtcagcatgtgttactttctatagtgagacgaaatga 740
Query: 541 ttgttcccacccccaaaacatgctcctccttaggaaaacaaacacttgtaagtttatttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgttcccacccccaaaacatgctcctccttaggaaaacaaacacttgtaagtttatttt 800
Query: 601 ag 602
||
Sbjct: 801 ag 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_k19.g1 MSMg01no492_k19.g1 CHROMAT_FILE:
MSMg01no492_k19.g1 PHD_FILE: MSMg01no492_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:58 2005
(481 letters)
>mm_chr9_23303807_23304687
Length = 881
Score = 551 bits (285), Expect = e-161
Identities = 309/323 (95%), Gaps = 11/323 (3%)
Strand = Plus / Minus
Query: 1 ctcccctctctattttgtagagtagtttcagaagcattagtatgttaggttctctttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcccctctctattttgtagagtagtttcagaagcattagtatgttaggttctctttaaa 259
Query: 61 ggtcttatagaacttatcagtggctactttgaagaatatttttattacatttaatgctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtcttatagaacttatcagtggctactttgaagaatatttttattacatttaatgctac 199
Query: 121 tactggttttaaatctggctatgttatttaattttgatttaacttatgaacctaggaact 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tactggttttaaatctggttatgttatttaattttgatttaacttatgaacctaggaact 139
Query: 181 cattcatttcttttagatttttccacataattggttttgaaggtgtttgctaaagatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cattcatttcttttagatttttccacataattggttttgaaggtgtttgctaaaga---- 83
Query: 241 ttttt------tacattgatatctgctatgatgtcttcattttcatctctaaatttgtga 294
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 82 -ttttccaaactacattgatatctgctgtgatgtcttcattttcgtctctaaatttgtga 24
Query: 295 gtttgaatctcttcatattagtc 317
|||||||||||||||||||||||
Sbjct: 23 gtttgaatctcttcatattagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
