BAC Information

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BAC

Clone NameMSMg01-492L09
Chromosome9 (Build37)
Map Location 122,657,050 - 122,657,615
singlet/doubletsinglet
Overlap geneLOC666218
Upstream geneNktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
Downstream geneLOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492L09.T7 (MSMg01no492_l09.b1)MSMg01-492L09.TJ (MSMg01no492_l09.g1)
ACCAG570401AG570402
length715733
length of high quality
(start - end)		566 (68 - 633)30 (109 - 138)
definitionCHROMAT_FILE: MSMg01no492_l09.b1 PHD_FILE: MSMg01no492_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:00 2005CHROMAT_FILE: MSMg01no492_l09.g1 PHD_FILE: MSMg01no492_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTTTTCCATTTTGTGTTGCCTCATTTTTAGTTATTTCAAGAGG
TGGATTTTCTAAACTTTTACATTTTTTAATTCGAATTCTTCTTTTAATAC
CTTCTCCCAATTCTTCCTTATCCAAAGACTGTAAGAAAGCCATATTTTGA
AATTCACTGCACTCCACTGTTTGCAAAGACTCCGAACTGGTTATTGATGT
CTTTCTTACCAGGTCAGTCCCTGGCTGTGGATCATCACTTGGGGCCTCAG
TAATTTTTCCATTCTCTTTGGCTGATCAAAACAAGAAAACACACCAGAAG
ACATTTTTACACTGGGCAGAAAGAAGCAATATCAGTTAACAGAAAAATCT
GTGAAGCCATCCATTTGTATTTTCCTGATGAGCTATTTAGACATACAAAC
TGATTTTCATATTAAGTATTAAAAATTTTTAAACAGGGTCCATTGCATAA
CACAGGCTGACCTCGAACTTGAGATTCTCCTGCTTCAGCCTCCCACCTGG
TAGATTATGGGTGTGAATCGCCTTGGCCAGCTTTAAGATCTAATTAAGAA
CTAGAAATAAACCTCTATAAATTCTAAAACAGCAGACAAACCTTTATAGA
TAGCATCATTTACTCTAGTTAAAACAAACCACTAGTATTATTAATCCCCT
CGACAGTAATTATAA

ACGATATACGGGAAGGCGGGGGCTCCCTGTTCAAAATGGGGNGACCTATA
GAATATCACGAAATCATTCTATANNTAATATACCAATTCTCTCAATATTT
CATCTATGACCCTATATCCAGATGTCAGCTGAGTTTTTCTGTTTTAAATG
AACACATCAGTTGTGTAAAAGCTGTGGATAAAAATACCTGAGTGAAGCCA
TTTGGGGAGGGGAGGCTTATTTTGGTACCCCGTGACGGTGTATATATAGT
ACATCAAGGTGGAAAACATGTTGGAAGGCTTGTTTCGCGCTCTGCCCATT
TTTTTTTCACTGCTAAAGGGGCGTGGCCCCTGTTGCAAGTATTGCGTGTC
CTCTGTGGCCTGTTGTTCTTTCCATACCCCCTTTTTCCTTCCCCCTACTC
TTTGGCCTTCTCCTGGTTAATTAAACCCCCCCTTCCTACCACCTCCCTCT
CCTCTTGTTATTTTCGTTTATAAATCCTCCCACACTCTCTTCCCTTGTGT
CCACTTTTCCAGTCCCACTGTAATGCTCGCCCTCTCTGTCTCCCCCCTCC
TTTGCTCGAATAAATGTGGCCATGGATAACCTCTCCTACACCTCTTTGAC
TCTCTCCTTCCTTTATCCTTTTTTAATTTTATCCTCTCTCCTTTTACCAT
ATACTATTTCTTCTTGCTTCTTTGTCACTAAATATCTCCCTTCCGTGGCG
TCCTTCCATTCTCTCTTTATTCTGCACTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_l09.b1 MSMg01no492_l09.b1 CHROMAT_FILE:
MSMg01no492_l09.b1 PHD_FILE: MSMg01no492_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:00 2005
         (566 letters)



>mm_chr9_122657008_122657973
          Length = 966

 Score = 1087 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgttgcctcatttttagttatttcaagaggtggattttctaaacttttacatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgtgttgcctcatttttagttatttcaagaggtggattttctaaacttttacatttttt 549

                                                                       
Query: 61  aattcgaattcttcttttaataccttctcccaattcttccttatccaaagactgtaagaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aattcgcattcttcttttaataccttctcccaattcttccttatccaaagactgtaagaa 489

                                                                       
Query: 121 agccatattttgaaattcactgcactccactgtttgcaaagactccgaactggttattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agccatattttgaaattcactgcactccactgtttgcaaagactccgaactggttattga 429

                                                                       
Query: 181 tgtctttcttaccaggtcagtccctggctgtggatcatcacttggggcctcagtaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtctttcttaccaggtcagtccctggctgtggatcatcacttggggcctcagtaatttt 369

                                                                       
Query: 241 tccattctctttggctgatcaaaacaagaaaacacaccagaagacatttttacactgggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tccattctctttggctgatcaaaacaagaaaacacaccagaagacatttttacactgggc 309

                                                                       
Query: 301 agaaagaagcaatatcagttaacagaaaaatctgtgaagccatccatttgtattttcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaagaagcaatatcagttaacagaaaaatctgtgaagccatccatttgtattttcctg 249

                                                                       
Query: 361 atgagctatttagacatacaaactgattttcatattaagtattaaaaatttttaaacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgagctatttagacatacaaactgattttcatattaagtattaaaaatttttaaacagg 189

                                                                       
Query: 421 gtccattgcataacacaggctgacctcgaacttgagattctcctgcttcagcctcccacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gtccattgcataacacaggctgacctcgaacttgagattctcctgcttcagcctcccacc 129

                                                                       
Query: 481 tggtagattatgggtgtgaatcgccttggccagctttaagatctaattaagaactagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tggtagattatgggtgtgaatcgccttggccagctttaagatctaattaagaactagaaa 69

                                     
Query: 541 taaacctctataaattctaaaacagc 566
           ||||||||||||||||||||||||||
Sbjct: 68  taaacctctataaattctaaaacagc 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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