BAC Information

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BAC

Clone NameMSMg01-493I23
Chromosome9 (Build37)
Map Location 35,862,617 - 35,863,131
singlet/doubletsinglet
Overlap genenone
Upstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
Downstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493I23.T7 (MSMg01no493_i23.b1)MSMg01-493I23.TJ (MSMg01no493_i23.g1)
ACCAG571049AG571050
length698735
length of high quality
(start - end)
72 (46 - 117)516 (76 - 591)
definitionCHROMAT_FILE: MSMg01no493_i23.b1 PHD_FILE: MSMg01no493_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:09 2005CHROMAT_FILE: MSMg01no493_i23.g1 PHD_FILE: MSMg01no493_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAATCCGCGGAA
TTCCTACCCAGATTTCTTTGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAGGAAGTGGTCAAAAATCCACTATTTGCAGATCATATGATAGTAT
ATACNCGTGACCCTAAAAATCTGCAAAACACTCCTAAACCTGATACAGCT
TCCTGCAGTACCTAATGAGAGAGGTACTGAATGGGGGAGTGCTTTTCTTG
TGAGAGGGGGGAGGGAGAGATAGGAATGTAGGAAGTCTGCCGCTGGGGAG
TGGGGGGGGTGTGGAGAGCTGGGGGGGGGTGGTGGAGGAAATAAAAACTT
TTTACAAAAATTTCCCTCTTTAAAAAAATTTTAAAAATTTCCAAAAAAGA
ATTTCCCCCCTTTTTTTTCGCAGATTATTTTTTAAATTTTTCTCCCAAAT
TTTTTAATTTAAAACCCCCCAAAACCCCTTTTTTTTTTTTTTTAAAAGAT
TTTTTTTTTTTTTTTAAAAAAACCCCTAAAAAAATTTTTTCTAAAAAAAA
CCTCGGGAACACCCTTCCCCCCCTTTTTTNAAAAACATTTTTAAAAAAAT
TTTTTTTTTCCCCCCCCCCCCTTTCCCTATATTAATATAAAAAAAAAAAC
ACACCCCCCCCCTCTTTTTTTTTTTTTTTAAAAAAAAAAAAATATATG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATATTGGTACACTGTGTTCCGA
TCATGAAATCAGAAAAAAATAGGAAAAGAAAACTAAATTTTAATTTGATT
AGTGAATATAGCCATAAATATGATCAAAATACCCATAACATTGATTGCCA
TCAAATTTCTTTTAAAATGTTAGATGTGTTGATCAAAGAGGTTTATCACC
AATTTATTCATGATGCAAAATTTATCAATGCAATTAGTCTATAATTTGGA
TTTATATTTTATTTTTAATTGGATATTTAATTTATTTACATTTCAAATGA
TATCAACTTTTCCAGTTTTCCCTCTGCAACCCTAACTCATCCCCCCTAGC
CCTGCTTTATGAGGGTGCTCCCCAATGTACCTTTCCACTCCTACCTAACC
ACCTTAGCATTCCTCTACACTGGAGCAACAAACCTTCAGAGAACCAAGGT
ATTCCCCTGCCATTGATGTTGGAGAAGGCCCTGTTAGCTCCTTCAGTCCT
TTCTTTAACTCCTCCATTGGAGTCCCTGTGCTCACTCTAATGGTTTACTG
CAAACCTCCACACTTGTCTTGGGCAGAATCTGGCAGAACCTCTNCAGAGA
CAGTTGTATGAAGCTCCTATCAGCAAGCACTTCTTGACATCANGAATAGT
GTCTGGGGTTGGTGTCTGTATGAGATATAGATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_i23.g1 MSMg01no493_i23.g1 CHROMAT_FILE:
MSMg01no493_i23.g1 PHD_FILE: MSMg01no493_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:09 2005
         (516 letters)



>mm_chr9_35862417_35863332
          Length = 916

 Score =  936 bits (484), Expect = 0.0
 Identities = 508/516 (98%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatattggtacactgtgttccgatcatgaaatcagaaaaaaataggaaaagaaaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatattggtacactgtgttccgatcatgaaatcagaaaaaaataggaaaagaaaacta 260

                                                                       
Query: 61  aattttaatttgattagtgaatatagccataaatatgatcaaaatacccataacattgat 120
           |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||
Sbjct: 261 aattttaatttgattagtgaatatagccataaatacaataaaaatacccataacattgat 320

                                                                       
Query: 121 tgccatcaaatttcttttaaaatgttagatgtgttgatcaaagaggtttatcaccaattt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatcaaatttattttaaaatgttagatgtgttgatcaaagaggtttatcaccaattt 380

                                                                       
Query: 181 attcatgatgcaaaatttatcaatgcaattagtctataatttggatttatattttatttt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcatgatgcaaaatttatcaatgcaattagtctataatttggatttatattttatttt 440

                                                                       
Query: 241 taattggatatttaatttatttacatttcaaatgatatcaacttttccagttttccctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattggatatttaatttatttacatttcaaatgatatcaacttttccagttttccctct 500

                                                                       
Query: 301 gcaaccctaactcatcccccctagccctgctttatgagggtgctccccaatgtacctttc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaccctaactcatcccccc-agccctgctttatgagggtgctccccaatgtacctttc 559

                                                                       
Query: 361 cactcctacctaaccaccttagcattcctctacactggagcaacaaaccttcagagaacc 420
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cattcctgcctaaccaccttagcattcctctacactggagcaacaaaccttcagagaacc 619

                                                                       
Query: 421 aaggtattcccctgccattgatgttggagaaggccctgttagctccttcagtcctttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaggtattcccctgccattgatgttggagaaggccctgttagctccttcagtcctttctt 679

                                               
Query: 481 taactcctccattggagtccctgtgctcactctaat 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 680 taactcctccattggagtccctgtgctcactctaat 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)