BAC Information

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BAC

Clone NameMSMg01-494G12
Chromosome9 (Build37)
Map Location 119,792,731 - 119,792,965
singlet/doubletsinglet
Overlap genenone
Upstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a
Downstream geneLOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494G12.T7 (MSMg01no494_g12.b1)MSMg01-494G12.TJ (MSMg01no494_g12.g1)
ACCAG571695AG571696
length733738
length of high quality
(start - end)
114 (64 - 177)237 (64 - 300)
definitionCHROMAT_FILE: MSMg01no494_g12.b1 PHD_FILE: MSMg01no494_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:14 2005CHROMAT_FILE: MSMg01no494_g12.g1 PHD_FILE: MSMg01no494_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCTGCAAACGACTCCACATCGGTAGCCGTCCGCGGAATTCTGGGGTA
CCTTAGAGGGCGTAAATTCTAGAGCCCTTATGGGTAGGTTGCTGATTGTT
GGTTGTCATTTGCTACATAGTCATGCGAAAGGAACAATGAAGAAAGAAGA
AGAGAAGGAAGAAGAGGAAGGAGAAGGAGGTGGCGGCTAATGCTGGCGAG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTTTTATTGCAAGCTT
GTACAACCTCTCTGGAAATCAGTCTGGCCATTCCTCAGAAAATTGGACAT
ATTTTTTTTGTGAGGANCCCGCAANACCCCTCCGGGGCANNNATCCTTTT
TATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGACAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTATAAATAATGAATTTATGAAATTTCTTGACCAATGGATGGACCT
GGAGGGTATCATCCTGAGTGAGGTAACCCTATCACAACACAACTTACTTG
ATTTGCACTCCCTGTTTAGTGGATATTATCCCTTTTTTTTTTTTTTCCCC
GACACCATTTTGCACTCCCTTGACACTTCTTACCAAGATGACCCAGTGTG
CGATCTTTGTACCTCCCTTTAACGCGTATCTCG
GTATGCCTGGCGGCCGCCGGTTCGACAAAGGGGAGGNGAACTATAGAAGT
ACTCGCGGAAGTCAGTATTTAAACAGGGGAGACAAAAACTTCAGTCCTGT
GGATGTGGCTCACTTGTAGAGCTCTTGCTTTGCATTAAAAAAAAACAAAG
TTAGACCAACTTAGCACCATTATCTGACATAGCAGACAGAACAAGGGAGG
ATATCCACCAGGCAGAAAGCAAACCTGGATTTGGATTAACACAAGAAGCA
AAGAGCACCAGGGAATAGCTTGGTCAGTCCGTTTGTTCTTCCCTTCGGTT
TAATATTTTCTTTGATGTACATTGGGGTTTCTGCTTGTATTTATGCCTTG
GTGAGGGTGCCAAGGTCCCCTGAGTTAGACAGCTGTGAGCTGCCATGTGC
ATGTTGGGAACTGAACCCAGGGCCTCAGAAAGAGCAACCAGTGAGCCATC
TCTCCCGCCCAAATAGGTGCTTTGTAATGCATTACAGGCCCCTGAGCTGA
AGCAGGGGCTTCAGGCTGCTCCTCATATTTCACCTTTCTCTAAGGACTGG
CTCTGAACAGCTGAAAAAGCCCTGCCTCGAATAACTGGGGAACATGGCTG
CCTGCCCAACTCAAGGCCCAAGAGGAATTGTGGGTTACCAGCCTTCCCGT
TGGAAGTACCCCGGGGGGAACAATGGGAAATAACCGGTTTCTCTCCGAAC
AACAATTTGGTTTGTTGTATGTGTCGTGTCGTTAGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_g12.g1 MSMg01no494_g12.g1 CHROMAT_FILE:
MSMg01no494_g12.g1 PHD_FILE: MSMg01no494_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:14 2005
         (237 letters)



>mm_chr9_119792531_119793168
          Length = 638

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatttaaacaggggagacaaaaacttcagtcctgtggatgtggctcacttgtagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtatttaaacaggggagacaaaaacttcagtcctgtggatgtggctcacttgtagagct 376

                                                                       
Query: 61  cttgctttgcatt-aaaaaaaaacaaagttagaccaacttagcaccattatctgacatag 119
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 375 cttgctttgcattaaaaaaaaaacaaagctagaccaacttagcaccattatctgacatag 316

                                                                       
Query: 120 cagacagaacaagggaggatatccaccaggcagaaagcaaacctggatttggattaacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagacagaacaagggaggatatccaccaggcagaaagcaaacctggatttggattaacac 256

                                                                  
Query: 180 aagaagcaaagagcaccagggaatagcttggtcagtccgtttgttcttcccttcg 234
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 255 aagaagcaaagagcaccagggaatagcttggtcagttcgtttgttcttcccttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space:   143412
Effective search space used:   143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)