Query= MSMg01no494_l09.b1 MSMg01no494_l09.b1 CHROMAT_FILE:
MSMg01no494_l09.b1 PHD_FILE: MSMg01no494_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:37 2005
(369 letters)
>mm_chr9_40006401_40007169
Length = 769
Score = 683 bits (353), Expect = 0.0
Identities = 365/369 (98%)
Strand = Plus / Plus
Query: 1 ctataccccattttttaatgggattagtagttaatttcttaacccttggtcttcctgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctataccccattttttaatgggattagtagttaatttcttaacccttggtcttcctgccc 260
Query: 61 tctgtagccacaaatttttgaacagaagtagatatcatccctcttgtagaataatcatta 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tctgtagccacaaatttttgaacagaagtagttatcatccctcttgtagaataatcatta 320
Query: 121 aatctaagcagaaagcaattggctgcatatgtaattgttgtaaccgctatatgttcatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctaagcagaaagcaattggctgcatatgtaattgttgtaaccgctatatgttcatag 380
Query: 181 tagtagtacatagaatttatagagcaggattgttggtgacatttctctcacagtagactg 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tagtagtacatagaatttatagagcaggactgttggtgacatttctctcacagtagactg 440
Query: 241 catcgtaccttctggcactatgaaagccagaaccagcaggtgagaaccttccagctcagt 300
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagtaccttctgacactatgaaagccagaaccagcaggtgagaaccttccagctcagt 500
Query: 301 cccagattgatttctcatgttccatagacaaagtatgcagtgtcttcagtagtagtctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagattgatttctcatgttccatagacaaagtatgcagtgtcttcagtagtagtctta 560
Query: 361 ctatttgtt 369
|||||||||
Sbjct: 561 ctatttgtt 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_l09.g1 MSMg01no494_l09.g1 CHROMAT_FILE:
MSMg01no494_l09.g1 PHD_FILE: MSMg01no494_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:37 2005
(465 letters)
>mm_chr9_40188767_40189632
Length = 866
Score = 820 bits (424), Expect = 0.0
Identities = 449/458 (98%), Gaps = 3/458 (0%)
Strand = Plus / Minus
Query: 1 tcccttgagttattctccttggccaaatccttgtgtggaccctgactcttgagtttacag 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 458 tcccttgagttattctccttggccaaatccttgtgtggaccctgacttttgagtttacag 399
Query: 61 tttctggacttgcttgggccaagagtcttgggtgtgcagaggtcatctgtttcagttgag 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttctggacttgctttggccaagagtcttgggtgtgcagaggtcatctgtttcagttgaa 339
Query: 121 tggtgacctctgttacctttacagtccctactttgaatgaggcaagaaactccagtcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tggtgacctctgttacctttacagtccctactttgaatgaggcaagaaactccagtcatt 279
Query: 181 gtttttctagggtaagacagtaaacagtgccagggatttgaaggaggccaagaccaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtttttctagggtaagacagtaaacagtgccagggatttgaaggaggccaagaccaaaaa 219
Query: 241 a-tcccccaaaaaaccaaaaaacaaaacaaagcaaaacaaaacaacaacaacaaaaaaaa 299
| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 218 aatcccccaaaaaaccaaaaaccaaaacaaaacaaaacaaaacaacaacaacaaaaaaaa 159
Query: 300 ccaaaaaccaaaaccaaaacaaatccaaaaaaaaaaaaaaa--tcaagggaggtgaaata 357
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 158 ccaaaaaccaaaaccaaaacaaatccaaaaaaaaaaaaaaaaatcaagggaggtgaaata 99
Query: 358 aactttttaactaagtaaagtttaaaagaatcaccccaggaaacttagcataacacaaac 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aactttttaactcagtaaagtttaaaagaatcaccccaggaaacttagcataacacaaac 39
Query: 418 caactgtactttgatccaatgggtatctgtgagccaca 455
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 caactgtactttgatccaatgggtatctgtgagccaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space: 389480
Effective search space used: 389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
