BAC Information

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BAC

Clone NameMSMg01-494P17
Chromosome9 (Build37)
Map Location 38,322,685 - 38,323,296
singlet/doubletsinglet
Overlap genenone
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907
Downstream geneOlfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494P17.T7 (MSMg01no494_p17.b1)MSMg01-494P17.TJ (MSMg01no494_p17.g1)
ACCAG572133AG572134
length747749
length of high quality
(start - end)		675 (54 - 728)615 (60 - 674)
definitionCHROMAT_FILE: MSMg01no494_p17.b1 PHD_FILE: MSMg01no494_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:57 2005CHROMAT_FILE: MSMg01no494_p17.g1 PHD_FILE: MSMg01no494_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCCTGATATTTC
CAGACTTTTATCATGAAGGGACATTGGATTTTGTCAAATGCTTTCTCAGC
ATATAGTGAGATAATCATATGTTTTTTTTTCCTTTGAGTCTGTTTATATT
GTGGATTATACTGATGGATTTCTGTATACTGAACTATCCCTGCATCCCTG
GGATCAAGCCTCTTTGATCATGATGGATGATCATGTTGATGTGTTCTTGG
ATTTGGTTTGTGAGAATTTTATTGAGTATTTTTGCATCAATATTCATAAG
GGAAATTTTTTCTGTAGTTCTCTTTCCCTGTTGGGTCTTTGTGTGGTTTA
GGTATCAGAATAATTGTGGCTTCATAGAATGAATTGGGTAGTGTTCTTTC
TGTTTCTATTTTGTGAAATAGTTTGAGAAGTGTTGGTATTAGATCTTTGA
AAGTTTGGTAGAACTTTGCACTAAACCCATCTGACCTTGGGCTTTATTTG
GTTGGTAGACTATTAGTGACTGTTTCTATTAATATATATTTCTTCACTGG
ATATGGGACTGTTTAGATAGTTTATTTGATCCTTTGGTACCTGGTATCTG
TCTAGAAAATTGTCCATTTTATCCTGATTTTCCAGTTTTGTCCAGGCTTT
TGTAGTTGGATCTGATGATTGCTTGGATTTCCTTGGTTTCTGTTGTTATG
TCTCCCTTTTCATTTTTGATTTTGTGAATTAAGATACTGTCTCTGTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATCCTTCGTCTCCTTTTTGTCATTGCTTCAGCCCTGGCCTG
ATATGTGGAGAACCATTTCCAACCTAGAGCTAACCTCATCTAGCTACAAC
TGTTATGGCTTCAGGACCAAAATATTTTTCCAAATCTAATCAAAATTTAA
ATTTATCCAGATTCCCTGAGTGACTAGAAACCTGTGCTTGCTATAGGAAA
ACAATCAATACATATCTGAGAGATGATACTTAGGATGAACATTTATTGAC
TGTGACATTGTATCACTGTGTCTCCTGAAACTTTTAATACCTCATGCAAT
CTTCTCCAGGACATTCTTCTGTGAATTTCATTTGATTTTTAGAATTGCAT
GATATTAAATTAACGGATACTCCTGAAATCCTAGGACTTCACTTCAATGT
CAAACCAGCCACAGGATAATGTCCAAGTTACTAAAGGAAATCACTGTGTC
ATATCTTTAATATGTGCAAGGAAAACAGTTATATATATAAACAGAATGTA
GTATATTGGTTGCTGTGGCTCATAATTTTCAAAATCATAGAGCTACCAGA
TAAATTTGCAAAATCATTCAAATGTTAAACATACTTTAGCCTGGTGGCAC
ATACCTTTAATACCAGCACTTCGGAGGCAGACACAGGCAGATTTCTGAGT
TTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_p17.g1 MSMg01no494_p17.g1 CHROMAT_FILE:
MSMg01no494_p17.g1 PHD_FILE: MSMg01no494_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:57 2005
         (615 letters)



>mm_chr9_38322485_38323499
          Length = 1015

 Score = 1145 bits (592), Expect = 0.0
 Identities = 607/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccttcgtctcctttttgtcattgcttcagccctggcctgatatgtggagaaccatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atccttcgtctcctttttgtcattgcttcagccctggcctgatatgtggagaaccatttc 753

                                                                       
Query: 61  caacctagagctaacctcatctagctacaactgttatggcttcaggaccaaaatattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 caacctagagctaacctcatctagctacaactgttatggcttcaggaccaaaatattttt 693

                                                                       
Query: 121 ccaaatctaatcaaaatttaaatttatccagattccctgagtgactagaaacctgtgctt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcaaatctaatcaaaatttaaatttatccagattccctgagtgactagaaacctgtgctt 633

                                                                       
Query: 181 gctataggaaaacaatcaatacatatctgagagatgatacttaggatgaacatttattga 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 632 gctataggaaaacaatcaatacatatctgagagatgacacttaggatgaacatttattga 573

                                                                       
Query: 241 ctgtgacattgtatcactgtgtctcctgaaacttttaatacctcatgcaatcttctccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgtgacattgtatcactgtgtctcctgaaacttttaatacctcatgcaatcttctccag 513

                                                                       
Query: 301 gacattcttctgtgaatttcatttgatttttagaattgcatgatattaaattaacggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gacattcttctgtgaatttcatttgatttttagaattgcatgatattaaattaacggata 453

                                                                       
Query: 361 ctcctgaaatcctaggacttcacttcaatgtcaaaccagccacaggataatgtccaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctcctgaaatcctaggacttcacttcaatgtcaaaccagccacaggataatgtccaagtt 393

                                                                       
Query: 421 actaaaggaaatcactgtgtcatatctttaatatgtgcaaggaaaacagttatatatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 actaaaggaaatcactgtgtcatatctttaatatgtgcaaggaaaacagttatatatata 333

                                                                       
Query: 481 aacagaatgtagtatattggttgctgtggctcataattttcaaaatcatagagctaccag 540
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 332 aacagaatgtagtatattggctgctgtggctcataattttcaaaagcatagagctaccag 273

                                                                       
Query: 541 ataaatttgcaaaatcattcaaatgttaaacatactttagcctggtggcacataccttta 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 272 ataaatttgcaaaatcattcaaatgttaaacatactttagcctggtagcacataccttta 213

                       
Query: 601 ataccagcactt 612
           ||||||||||||
Sbjct: 212 ataccagcactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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