BAC Information

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BAC

Clone NameMSMg01-495I10
Chromosome9 (Build37)
Map Location 53,669,977 - 53,670,292
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2
Downstream geneSln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I10.T7 (MSMg01no495_i10.b1)MSMg01-495I10.TJ (MSMg01no495_i10.g1)
ACCAG572549AG572550
length743738
length of high quality
(start - end)
318 (325 - 642)586 (84 - 669)
definitionCHROMAT_FILE: MSMg01no495_i10.b1 PHD_FILE: MSMg01no495_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:37 2005CHROMAT_FILE: MSMg01no495_i10.g1 PHD_FILE: MSMg01no495_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATATTTGCGGCCGCNAAACGACCCCNATTTCACACTGCGCNGNG
GAATTCAAGTGCTACTGCAACACCGCTTAANNANAATGATAAGACCTGTG
GGTAGAGATGGTGTCTACTGCAGCTGGAATGTTTGAAACCCAATCCCTGG
TGGTGTTTGGATGTCTTAGAAGGCTTGAGGGCAGAGTCCTGGATGGGACT
GGTGCCTTTATAAAAGACTTCAGAGAGTTGCCTTCCTCCATATGCCGGTG
ATAGATAGTGAGAAACTGGCTGCTTAAATACCAGGAAGCAGGCTCTCATC
AGACACGCAGTCCATATTATTTTATTCTCTGCAACTGTGAAAAATCAACT
TCTGTTGTTTTAAACCACCCAGTCCTGGATAACATCTTGTTATAACAGCT
AGGATGGACCGAGGCATGCCTGGGGCTATGTCAAATGTGGTGAGGAAACT
AGGAACAAGCTCTTTTAATACTTAACATAGGTAGCAAATTAAAGCTTCAG
CCCCCACATCAGACAAACACACCCCCCCCCCCAACAACAATGACAAAGCA
GGTTCAACATAAACACTGTATTTATTGGCTCCCTTGCTTTTCCCCTGTTC
CATCCCGTCTTCGACTTGTGAAAGACTAGCTTTAATTTGGCTACATGGTA
ATAATTCTATGACTTAGGAAACTAAAGGGTGATTCATTGTTCAGGACATT
GTCTGATGACCGCACCCATTAAGCATACATTAACCTCTCCAAA
GGCCCCGATGAAGTGGGAGGCCTGGGGGCGCCTGGCTCCTACCTCGGGTG
ACCTATAGAATTCCCCCGGACATCTTTGGNCAGTTCTGAGCCCCATTTTT
TAATGCTGGATCCTCTACCGGAGGATCCAGCAGTACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGTC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTATTAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAG
AATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAA
AACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAG
GATGGACCATGTAGAGACTGCCATATACAGGGATCCACCCCATAATCAGC
ATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGA
CCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i10.b1 MSMg01no495_i10.b1 CHROMAT_FILE:
MSMg01no495_i10.b1 PHD_FILE: MSMg01no495_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:37 2005
         (318 letters)



>mm_chr9_53669776_53670492
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctctgcaactgtgaaaaatcaacttctgttgttttaaaccacccagtcctggataacat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctctgcaactgtgaaaaatcaacttctgttgttttaaaccacccagtcctggataacat 261

                                                                       
Query: 62  cttgttataacagctaggatggaccgaggcatgcctggggctatgtcaaatgtggtgagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttgttataacagctaggatggaccgaggcatgcctggggctatgtcaaatgtggtgagg 321

                                                                       
Query: 122 aaactaggaacaagctcttttaatacttaacataggtagcaaattaaagcttcagccccc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaactaggaacaagctcttttaatacttaacataggtagcaaattaaagcttcagccccc 381

                                                                       
Query: 182 acatcagacaaacacacccccccccccaacaacaatgacaaagcaggttcaacataaaca 241
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 ccatcagacaaacacacccccccccc-aacaacaatgacaaagcaggttcaacataaaca 440

                                                                       
Query: 242 ctgtatttattggctcccttgcttttcccctgttccatcccgtcttcgacttgtgaaaga 301
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ctgtatttattggctcccttgcttttcccctgttccatcccgtcttcaacttgtgaaaga 500

                            
Query: 302 ctagctttaatttggct 318
           |||||||||||||||||
Sbjct: 501 ctagctttaatttggct 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)