BAC Information

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BAC

Clone NameMSMg01-496A21
Chromosome9 (Build37)
Map Location 15,380,094 - 15,380,718
singlet/doubletsinglet
Overlap geneCcdc67
Upstream geneAmotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612
Downstream geneLOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A21.T7 (MSMg01no496_a21.b1)MSMg01-496A21.TJ (MSMg01no496_a21.g1)
ACCAG572953AG572954
length7571,391
length of high quality
(start - end)
627 (72 - 698)---
definitionCHROMAT_FILE: MSMg01no496_a21.b1 PHD_FILE: MSMg01no496_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:15 2005CHROMAT_FILE: MSMg01no496_a21.g1 PHD_FILE: MSMg01no496_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCACGTTCCGACCTTCACTGGAAGTTCTTTACAGCACGAGGATA
AACTGAATGAAGGTCTTTGAGGACCTCAGTGGGAAGTCTACCCCCGTGCC
TCATTGCTCTCTTGCATTCGGGACTGGAGAGATGGCGCAGAGGTGACAAT
CTCTTCTAGAGGACCAGAGTTCAGTTCCCAGCACCCACAATGGGCATCTC
ACAACTAAATGTAATTCCGACTTCAGGGGATTTGACACCCTTCTCTGGCC
TCCAAGGGCATATGAACATACGATAAACACACACACACACACACACACAC
ACACACACACACACACACACAAATAAAACTGAAAATAATCCTAAAAAGAA
TCTCATAAGTTCCTATCAGTAATAGCCTAAAGGTCTTATTTTATTACACT
CAAAATTTAATATTGCTATTTGTCAGATTTGCCAATGGCTGGTGACGGCA
GGCTTTATCGCTGAACTTGAATGGGTATCCATGATCTTTTTGGCAACTTC
ACACTATGTGGTCTCAGCTGCTTCTTGTATTCTTTGGCTCTTTTCCCACT
TAAGAGTTGTTTCTTACTAACATCAAAATATGTTTTAATACTAGAGACAG
AAATCCATAGAATCTCCAGTTGGTAGAAAGTATGGGGTTTTTTTAAAGGT
ATTTTTAAAGGTTTAGTTGTGTTATGTGCCATGTTTTCTCTAGGAGGGGA
CTTTGTT
TCCCCGCGCGGGGTGGCAGGTGGCGGCTGTCGCGAGTGGGAGCCTTCTCT
CTCCCGCGGAGGGTGAGAGGGGTTGTCGCTTTTTTCCTCGCTTCCTTACT
TATTCTATTCCGCCTGTATCTACTGTGGTCGGAGAGTCGTGGTATAATAA
GTATACATGATAGGCTGATACATACGACGCTGTCTTCGCCACACGGCGGC
CCACCGCGGCGACACTAGTCAATATATCATCTTTTTAACCCACTACCCTC
TTCGTCTATTCGCCCCCTCCTTACGTGTGTNCCGCCCCGCCACCCGCGCA
CATATAATAATATTATTGAGCTGCTGGGTACACCGTTGCTGCTGCCGCTC
TGATTAAATAGTAATTTTATCATACGTCCTGTGGCGCTCCACAATGTAAG
AATAGGACAGAACGAGCGTAATGGGTCTGGTTTATAGAGTGACGCACACG
CGGGTCGATTTGCAACAGACGCGGCCAGCTGCACGGTCTTTGTTTGGCTT
TACGCACGAAATTGGCGTGCTGCGATATATACGTATTGGGTGTGACGAGG
CGAGAGATAATGCGCTATCACGTAACCTTATCATAATTATACCACGACAA
CTANCAGTACAGAACTACTTACAGCGAGTTCCAATCTCTCTATACAGTGN
CACATGATTCTGAGGCAGCCGATATACTATCCTATATCTAAAGAGCGCCC
GCGCGCTATGTATTGGNCGGAGGTATACTCATAGAGTGGAGAGCGACGAT
CGGAGACATGTAAGACAGTTGTGAATGTGGTGGCAGATAAGATATACTAA
TAGGACGTCCNCGGACGGGAACGCGTGTACAGATAGTGTATATTGTCTAT
ACTCTCATCATAGCGCACTCGTGCTCGTAGTTCTGACGCGATGTCATCGC
TCTCTGAACATATCGCACATCAGTTGTAGTGNTTGATTATGNGTGCTCTG
CTGGGCTTATTATGTACGCTGAGGCTGTGATATAGTGATATTTGGCACAG
CGACGAGTCAATCCTATAATACATAGCGTCGTCTTATCGCGTACATACAT
CGACACTATAACCAGAGTTAATTAATTATTATGACAGCAGGCGCGTANAG
CGAATCGGCGTGATCTTGTGTATCGTGCTCGAGTATGATGGTGTGTGGTG
CGTGTGAGTGCGCTNGCATAATACGAGCGTGAGCGACTAGAGAGCACGCT
ATCGTGATATATGACTGTACATGAATGTCGCTGTGGATTACATCATCCGC
TGCCTGATAGACACGCNGCCATATATACTNTTATATATAANAAATATACA
GAAGTCTCTCAGTTGTACACGCACATNTGTCATCTATATCGTATTGACGC
TGCNCNCTCACACATCGCGAGGTGTAGCTCGTCTCANTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a21.b1 MSMg01no496_a21.b1 CHROMAT_FILE:
MSMg01no496_a21.b1 PHD_FILE: MSMg01no496_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
         (627 letters)



>mm_chr9_15379892_15380918
          Length = 1027

 Score = 1162 bits (601), Expect = 0.0
 Identities = 620/627 (98%), Gaps = 2/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggaagttctttacagcacgaggataaactgaatgaaggtctttgaggacctcagtg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cactggaagttctttacagcaggaggataaactgaatgaaggtctttgaggacctcagtg 262

                                                                       
Query: 61  ggaagtctacccccgtgcctcattgctctcttgcattcgggactggagagatggcgcaga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaagtctacccccgtgccacattgctctcttgcattcgggactggagagatggcgcaga 322

                                                                       
Query: 121 ggtgacaatctcttctagaggaccagagttcagttcccagcacccacaatgggcatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtgacaatctcttctagaggaccagagttcagttcccagcacccacaatgggcatctca 382

                                                                       
Query: 181 caactaaatgtaattccgacttcaggggatttgacacccttctctggcctccaagggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caactaaatgtaattccgacttcaggggatttgacacccttctctggcctccaagggcat 442

                                                                       
Query: 241 atgaacatacgataaacacacacacacacacacacacacacacacacacacacacacaca 300
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 atgaacatacgataa--acacacacatacacacacacacacacacacacacacacacaca 500

                                                                       
Query: 301 aataaaactgaaaataatcctaaaaagaatctcataagttcctatcagtaatagcctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaactgaaaataatcctaaaaagaatctcataagttcctatcagtaatagcctaaa 560

                                                                       
Query: 361 ggtcttattttattacactcaaaatttaatattgctatttgtcagatttgccaatggctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcttattttattacactcaaaatttaatattgctatttgtcagatttgccaatggctg 620

                                                                       
Query: 421 gtgacggcaggctttatcgctgaacttgaatgggtatccatgatctttttggcaacttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgacggcaggctttatcgctgaacttgaatgggtatccatgatctttttggcaacttca 680

                                                                       
Query: 481 cactatgtggtctcagctgcttcttgtattctttggctcttttcccacttaagagttgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactatgtggtctcagctgcttcttgtattctttggctcttttcccacttaagagttgtt 740

                                                                       
Query: 541 tcttactaacatcaaaatatgttttaatactagagacagaaatccatagaatctccagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 tcttactaacatcaaaatatgttttaatactagagacagaaatccatagtatctccagtt 800

                                      
Query: 601 ggtagaaagtatggggtttttttaaag 627
           |||||||||||||||| ||||||||||
Sbjct: 801 ggtagaaagtatgggggttttttaaag 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)