Query= MSMg01no496_m04.b1 MSMg01no496_m04.b1 CHROMAT_FILE:
MSMg01no496_m04.b1 PHD_FILE: MSMg01no496_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:12 2005
(633 letters)
>mm_chr9_75610977_75612009
Length = 1033
Score = 1123 bits (581), Expect = 0.0
Identities = 624/650 (96%), Gaps = 24/650 (3%)
Strand = Plus / Plus
Query: 1 tatacagagaaaccttgtctcggaaacaaacaaacaaacaaacaaa--------aaacca 52
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 189 tatacagagaaaccttgtctcggaaacaaacaaacaaacaaacaaacaaacaaaaaacca 248
Query: 53 acaacaaaaacaaacgaaagaaagaaagaaagaaaga--ga--gaaagaaaatattgtta 108
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 249 acaacaaaaacaaacgaaagaaagaaagaaagaaagaaagaaagaaagaaaatattgtta 308
Query: 109 ttaattctttggaagtttcacaaatgttttgattgtattctttcccctcccccagctctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttaattctttggaagtttcacaaatgttttgattgtattctttcccctcccccagctctt 368
Query: 169 tccaggtccaccctctctccatacccacccaacgttgtgctcttcttcctacccccccat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tccaggtccaccctctctccatacccacccaacgttgtgctcttcttcctacccccccat 428
Query: 229 caatacaaacgtgtgctgttt-----attatattcttggatgttccactggaacatagct 283
||||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 429 caatacaaacgtgtg----ttgcccaa--atattcttggatgttccactggaacatagct 482
Query: 284 gacttgccactggctacattcttagagagaacggaggctcccctctcccggctgtaacag 343
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 483 gacttgccactggctacattcttagagagaacggaggctcccctctcccagctgtaacag 542
Query: 344 ctgcccatcattcctcaggtaggggtaggagtttgtattcacatcactctgcatgcttgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctgcccatcattcctcaggtaggggtaggagtttgtattcacatcactctgcatgcttgg 602
Query: 404 atttggtctagcttgtttgaattcccactggccttacgtgtgttgtcacaatcaatgtga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atttggtctagcttgtttgaattcccactggccttacgtgtgttgtcacaatcaatgtga 662
Query: 464 ttttgcacgtgcagctgtcccgctgttctctgagaacatcgtttctttgtagtcagctgc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttttgcacgtgcagctgtcccgctgttctctgagaacatcgtttctttgtagtcagctgc 722
Query: 524 tgtttctggctcatacactctttctgccctctttttttttttgcagcgatgctctagtct 583
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 723 tgtttctggctcatacactctttctgccctctttttttttt-gcagcgatgctctagtct 781
Query: 584 tgggaggaaggcatatggtatatctgtttcattanggctaagcattatgc 633
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 782 tgggaggaaggcatatggtatatctgtttcattagggctaagcattatgc 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_m04.g1 MSMg01no496_m04.g1 CHROMAT_FILE:
MSMg01no496_m04.g1 PHD_FILE: MSMg01no496_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:12 2005
(250 letters)
>mm_chr9_75757190_75757840
Length = 651
Score = 352 bits (182), Expect = e-101
Identities = 213/226 (94%), Gaps = 6/226 (2%)
Strand = Plus / Minus
Query: 1 actgccccaaacaaacagaagaagcaaagctgttagaaaatacttgcatcttttatacaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 393 actgccccaaacaaacagaagaagcaaagctgttagaaaatacttgtatcttttatacaa 334
Query: 61 ctacttttttcaaagtatatgtagcc-aaaccttaccgacaagaaacaccataatgggtg 119
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 333 ttacttttttcaaagtatatgtagccaaaaccttacggacaagaaacaccataatgggtg 274
Query: 120 tgatgccagctaccattgttcagatatctaaggaaaccctcttgcttatgttttgatatt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 273 tgatgccagctaccattgttcagatatctaaggaaaccctcttgcttatgttttaatata 214
Query: 180 tattcatttatttcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt 225
||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 213 tattcatttattt-----gtgtgtgtgtgtgtgtgtatctgtgtgt 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 651
Length adjustment: 9
Effective length of query: 241
Effective length of database: 642
Effective search space: 154722
Effective search space used: 154722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
