Query= MSMg01no496_m18.b1 MSMg01no496_m18.b1 CHROMAT_FILE:
MSMg01no496_m18.b1 PHD_FILE: MSMg01no496_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:15 2005
(588 letters)
>mm_chr9_66788182_66789169
Length = 988
Score = 1106 bits (572), Expect = 0.0
Identities = 581/584 (99%)
Strand = Plus / Plus
Query: 5 gaattccatttatctcgcttatgcacacttcccaagagaagaagccacattcattgtgtt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttatttcgcttatgcacacttcccaagagaagaagccacattcattgtgtt 264
Query: 65 gtcatcaatccccaaacaagtacagcttattctcccggttctagaagtgaattaactgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcatcaatccccaaacaagtacagcttattctcccggttctagaagtgaattaactgaa 324
Query: 125 gactacccagaattcagaggtctttgggtttttttttttcttcatccaaaaaattaaggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactacccagaattcagaggtctttgggtttttttttttcttcatccaaaaaattaaggg 384
Query: 185 aggaataataaatggcattcaccaggaaagatccagaaaagttgaaactagaaggattct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaataataaatggcattcaccaggaaagatccagaaaagttgaaactagaaggattct 444
Query: 245 agctgaaccacacagctagtccacaaagagcagccatcgagtcagctgtgtcaagtggca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctgaaccacacagctagtccacaaagagcagccatcgagtcagctgtgtcaagtggca 504
Query: 305 ggctttcgcagctcatttctagcatctgaggaacgaacaaaccctgacctttgagtggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctttcgcagctcatttctagcatctgaggaacgaacaaaccctgacctttgagtggca 564
Query: 365 tgtggaattttaagcgaaagaatacagacaaagtatgcatgagacagcagtggttattaa 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 tgtggaattttaagcgaaagaatacagacaaagtatgcatgggacagcagtggttattaa 624
Query: 425 aaagtgattaatgtaggcaataagagtccacaaaagggagaggttccagccattcattta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 aaagtgattaatgtaggcaataagagtccacaaaagggagaggttccagccattcgttta 684
Query: 485 tgctgacctcagagcatctttcctatgggctgcaggatcaccagaagcttggagagagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctgacctcagagcatctttcctatgggctgcaggatcaccagaagcttggagagagtg 744
Query: 545 ccttcctatgactcaaagtaagtagctctgtttcttccctggtg 588
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccttcctatgactcaaagtaagtagctctgtttcttccctggtg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_m18.g1 MSMg01no496_m18.g1 CHROMAT_FILE:
MSMg01no496_m18.g1 PHD_FILE: MSMg01no496_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:15 2005
(515 letters)
>mm_chr9_66951359_66952273
Length = 915
Score = 830 bits (429), Expect = 0.0
Identities = 484/507 (95%), Gaps = 8/507 (1%)
Strand = Plus / Minus
Query: 1 actcagtgtaggtaagtgcaacctcacactcccgtgagacagagcagggtcctgagcatg 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 507 actcagtgtaggttagtgcaacctcacactcccgtgagacagagcagggtcctgagtgtg 448
Query: 61 cctccattctcaaaagctatttgggatcctcagttttcttctctctataaccaaaacttg 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cccccattctcaaaggctatttgggatcctcagttttcttctctctataaccaaaacttg 388
Query: 121 aattctttcctcatcaaggttttcagaagtctcttgagataaagctacttcattggctta 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 387 aattctttcctcatcaaggttttcagaagtctcttgggataaagctacttcattggctta 328
Query: 181 gtgtttgctttggctggtgaggctgcaggtatgatcctcagcactgaagagggaaaaaag 240
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtatttgctttgactggtgaggctgcaggtatgatcctcagcactgaagagggaaaaaag 268
Query: 241 cctgggagagaaagtagggtcattcgattgcccagagatagacatggcagttagcagct- 299
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 267 cctgggagagaaagtagggtcattcgattgcccagagatagacaaggcagttagcagctt 208
Query: 300 -------aagcagcttgtccatctcaggtctgcctgccgctgcagcccacgccctcagca 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agcagctaagcagcttgtccatctcaggtctgcctgccgctgcagcccacgccctcagca 148
Query: 353 cagcccctgcttcttggctccaggcaggtgacaggttacttctctgatgatgaaatgaag 412
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 147 cagcccctgcttcttggctccaggcaggtgacaggttacttctctgctggtgaaatgaag 88
Query: 413 caatttaaaccagattagaatatattggaggcaagtttgggagagttcactggccctaag 472
||||||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct: 87 caatttaaaccagattagaatattttagaggcaggtttgggagagttcactgggcctaag 28
Query: 473 aattgaggccaggggagtcaccatggg 499
|||||||||||||||||||||||||||
Sbjct: 27 aattgaggccaggggagtcaccatggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
