BAC Information

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BAC

Clone NameMSMg01-497E14
Chromosome9 (Build37)
Map Location 7,389,316 - 7,389,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b
Downstream geneMmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497E14.T7 (MSMg01no497_e14.b1)MSMg01-497E14.TJ (MSMg01no497_e14.g1)
ACCAG573891AG573892
length765778
length of high quality
(start - end)
260 (393 - 652)---
definitionCHROMAT_FILE: MSMg01no497_e14.b1 PHD_FILE: MSMg01no497_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:55 2005CHROMAT_FILE: MSMg01no497_e14.g1 PHD_FILE: MSMg01no497_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCTTCTTTTCCGACATACGAATATGAGCACTCCCTAGACCCT
GCTTATCAGCATCTAGCTAGAAAACGTGCCATCCCTGAAAACTGACTCAC
CGTCCCAAGATCATACGTGTAACAAAACACTACCTCCGATTCCATATGCT
TTGCTCGCTGAACTAAACAGACATATGTTCAGACTGCCCGCACACACACA
CACATCCACACGCTGTTGTCTGTATATAGAATATGTTCCACTCACCCGGT
ATGACTTGCCCGACCACGCTGATACAATAAGTGCCTCTCCTCAAGCCTAC
TCTGTGAATGCCAACTGCGTATATCTGTGTGTGCGTGAGAGATGTTCATT
CAAACACCCATGATTCATGTACAATTGAAGTAGGTGCTGACTCAAGGCAT
CTGTGTCCCCACTAGTGAGACAAGGTGGTCTGTCTCTAGGCTGCTCTATT
TCTGCCCCTTCTCTCCTGAAAGGAATTCAACACTATAAAGCACCGAGAAG
CATTGACCTCCTCCACAAGGTCAGCTCCCCATCGTGTCACTCCCATCTTT
GCACCACAGTCTAGTTTCTCAGGACTATTTCCACTTGTGGATGTCTGCCC
TCATGGAGAGACAAATGATATTTTATTGATAGATAATACTTTGATAGAAT
GGATGTTTGGATTGAATTGATAGCTCTCATTTCCTCTCCTTCATGAACCA
GAGCTTCCTTGACTN
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGATCCACTTAGATTATGACTATA
GAACCAGGAGATAACATGGTCTCAGATCTTATTCATCTACCCGACAACCA
CCAATTGTAGCCCCTTCATATGACTGAAGATGCTGACATTTTTCCACTGT
GATGGCTTTTAACTCCCTTGACAAAGATCTGGCGACCACACGCGTGAGGA
TTCATTTCTAGGACCTCAGTCCGATTCCAATGAACTGTCTGTCCCTCGTC
CCCTACCTAGCTATTGTTATTATTATTGATCAACATTACAGCCTGATGCC
ACGCATGCTGATTCCTCTAGAAGTGCTTTTATTAATGAAAATAGATTTTG
CTATCCCAGCTATGCTGTAGATAGTGCTTCTATGACAAAAGACTTACTGA
AAAGCTCACTCTGACTCTGTTAACAAATGATTATAAAATATCGTGGCGAA
TGCGTTGCATCTGAAAATTCCTTTTGGTGAAATCTACATTTATGATAAAT
AAAGCCTCCCAATTCTTGTGCATCTCACATGATTTTCTCTTTCTGGAACT
GTTCCCACATCTATCTTGTCATCCAAGGAGATCTTGACAGACATATCTAT
CACGTGCCTTAGATGAATCTCTGCCTAGTATTTCATATTAATTAACAGAG
TATGAGTATCGTAGATGTTGGCTCAAATACCTGCTCATTCTGCTGATCCT
TGTAGGGAGAGAAACGTGAGCTGAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_e14.b1 MSMg01no497_e14.b1 CHROMAT_FILE:
MSMg01no497_e14.b1 PHD_FILE: MSMg01no497_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:55 2005
         (260 letters)



>mm_chr9_7389116_7389775
          Length = 660

 Score =  464 bits (240), Expect = e-135
 Identities = 255/260 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcattcaaacacccatgattcatgtacaattgaagtaggtgctgactcaaggcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcattcaaacacccatgattcatgtacaattgaagtaggtgctgactcaaggcatct 260

                                                                       
Query: 61  gtgtccccactagtgagacaaggtggtctgtctctaggctgctctatttctgccccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtccccactagtgagacaaggtggtctgtctctaggctgctctatttctgccccttct 320

                                                                       
Query: 121 ctcctgaaaggaattcaacactataaagcaccgagaagcattgacctcctccacaaggtc 180
           ||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct: 321 ctcctgaaaggaactcaacactatacagcaccaagaagcactgacctcctccacaaggtc 380

                                                                       
Query: 181 agctccccatcgtgtcactcccatctttgcaccacagtctagtttctcaggactatttcc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agctccccatcgtgtcactcccatctttgcaccacggtctagtttctcaggactatttcc 440

                               
Query: 241 acttgtggatgtctgccctc 260
           ||||||||||||||||||||
Sbjct: 441 acttgtggatgtctgccctc 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)