BAC Information

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BAC

Clone NameMSMg01-497I17
Chromosome9 (Build37)
Map Location 20,653,650 - 20,781,012
singlet/doubletdoublet
Overlap geneA230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5
Upstream geneGA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8
Downstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497I17.T7 (MSMg01no497_i17.b1)MSMg01-497I17.TJ (MSMg01no497_i17.g1)
ACCAG574087AG574088
length753762
length of high quality
(start - end)		604 (54 - 657)294 (326 - 619)
definitionCHROMAT_FILE: MSMg01no497_i17.b1 PHD_FILE: MSMg01no497_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:16 2005CHROMAT_FILE: MSMg01no497_i17.g1 PHD_FILE: MSMg01no497_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,653,650 - 20,654,253)(20,780,719 - 20,781,012)
sequence
GGACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCCCACATTGACCCACCATGCATCCAAGCTAGGAGCCCCCAT
TCAACCAAGTGGTGGCTGTGCCCCCCACCTCTACCGGGACTATGCCCTTC
ATGCATCTCAAGACCGGGATGTGGAGGCTTAGACCATGGACCCTGCAGCC
CAGGACCACATGAAGAAGATTCTCTTGGTCTGAGTAATTCTGTAATTGGT
AAATCACGCTGCTGTGTAATTCCCTGCTTACGGGGCAGACAAGCAGGTTT
CCACATGTCACAGACTCTGTGATGGGTCGGGGATGGGAGAGAGATGTGGG
AGGCTGATGGGAAGGTTGCCAGTGAGCTGCCGGAGAAAGCATGAAGCTTC
ACTTCGAAGCTGTGAGTTCAAATGTTACCTTTCCTGTGTGACATTGCGTG
CCTTCCGGTAGTTCTCTGAGCCTCCATTTCCTCACTTATAAGAACAGGCT
AATCATGTCGTCTACAGAATAGTCAGAGAGCTGTGGGTCAACACGCTAGA
ATTAGTTCCAGCAGTTAGAAATTTAGATTTTTTTCATTGCATTGATGATG
TTGGGAATTGAACCCAGGGCCCTCTGCATGCAAGGCAAAAATACTTTACA
CTCTTCCACTGAGCTGCACACATCCCAGCCCTAGATTTTAAATAAATAAA
TTAAATAATAAATAAATTAATTAATTAATAAATAAATAAATTAATAAATA
ATG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCAAGTCGCCGCCGGAAAGAGGAG
GAGAGGAGGGCGGGGCGAGCAGGGAGTTGGGGCCGGAGGCAGCGGCTCTG
CCCGCCTCTCTCTTGTCCTGGGTCCCCAACTCCGGGACATAGACCGAGCA
CAGCCAACAGTCTCCAAAACCAACCACTGGCTGTCCCGGGGCGCAGACGC
CAAGGCCACTCAGGCCAGGGCAGGGACCCCGGCCGGCCTAGCCAGGTGAG
CGCGCGGGGCAGAGGGTATTTTTCTGATCTGGGCGGCCGCGGTTCACGGA
GACCCTGAGATCCCAGCTGGGGGGCCCGGTCCGGGGTCAGGCGCTCGTAC
AGGCGTTGCACGCGCTGCTCCAGGCTCTGCTGCACCGAGGGAACGGATCA
TCTACCATGCGCCCCTGCCCACTACTCCAGGCAGCTCGCCACCTACTCAG
TGGCGCACCCCCAGACTGAGCTCCCCGCCTTCCTTCGGGCAGGAAGTTGG
CGCTGAAGAGAAAGGCGGAATCCGAGCGCTTTGGGCTGGAGACTTTGCAA
GACTGGATGGGGGTTCTCAGGAAGCAGGGTTTGGGGCAGTGAGGTTGTTG
GGGAGAGGTGCAGCATCCCTTCTTCTCTGTCTCCGGCTAGGATGAAAGGT
GCTACGTACGAGCGAGCGGGGAAAGCTTTCAGAGTTCATGGGCGGGGTCC
CCGGCCGAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_i17.b1 MSMg01no497_i17.b1 CHROMAT_FILE:
MSMg01no497_i17.b1 PHD_FILE: MSMg01no497_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:16 2005
         (604 letters)



>mm_chr9_20653450_20654453
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcccccacattgacccaccatgcatccaagctaggagcccccattcaaccaagtggt 60
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcccccacaaggagtcaccatgcatccaagctaggagcccccattcaaccaagtggt 260

                                                                       
Query: 61  ggctgtgccccccacctctaccgggactatgcccttcatgcatctcaagaccgggatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgtgccccccacctctaccgggactatgcccttcatgcatctcaagaccgggatgtg 320

                                                                       
Query: 121 gaggcttagaccatggaccctgcagcccaggaccacatgaagaagattctcttggtctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcttagaccatggaccctgcagcccaggaccacatgaagaagattctcttggtctga 380

                                                                       
Query: 181 gtaattctgtaattggtaaatcacgctgctgtgtaattccctgcttacggggcagacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattctgtaattggtaaatcacgctgctgtgtaattccctgcttacggggcagacaag 440

                                                                       
Query: 241 caggtttccacatgtcacagactctgtgatgggtcggggatgggagagagatgtgggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtttccacatgtcacagactctgtgatgggtcggggatgggagagagatgtgggagg 500

                                                                       
Query: 301 ctgatgggaaggttgccagtgagctgccggagaaagcatgaagcttcacttcgaagctgt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatgggaaggttgccagtgagctgctggagaaagcatgaagcttcacttcgaagctgt 560

                                                                       
Query: 361 gagttcaaatgttacctttcctgtgtgacattgcgtgccttccggtagttctctgagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttcaaatgttacctttcctgtgtgacattgcgtgccttccggtagttctctgagcct 620

                                                                       
Query: 421 ccatttcctcacttataagaacaggctaatcatgtcgtctacagaatagtcagagagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatttcctcacttataagaacaggctaatcatgtcgtctacagaatagtcagagagctg 680

                                                                       
Query: 481 tgggtcaacacgctagaattagttccagcagttagaaatttagatttttttcattgcatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggtcaacacgctagaattagttccagcagttagaaatttagatttttttcattgcatt 740

                                                                       
Query: 541 gatgatgttgggaattgaacccagggccctctgcatgcaaggcaaaaatactttacactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgatgttgggaattgaacccagggccctctgcatgcaaggcaaaaatactttacactc 800

               
Query: 601 ttcc 604
           ||||
Sbjct: 801 ttcc 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_i17.g1 MSMg01no497_i17.g1 CHROMAT_FILE:
MSMg01no497_i17.g1 PHD_FILE: MSMg01no497_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:17 2005
         (294 letters)



>mm_chr9_20780519_20781212
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatctgggcggccgcggttcacggagaccctgagatcccagctggggggcccggtccggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gatctgggcggccgcggttcacggagaccctgagatcccagctggggggcccggtccggg 435

                                                                       
Query: 61  gtcaggcgctcgtacaggcgttgcacgcgctgctccaggctctgctgcaccgagggaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 434 gtcaggcgctcgtacaggcgttgcacgcgctgctccaggctctgctgcaccgagggaaca 375

                                                                       
Query: 121 gatcatctaccatgcgcccctgcccactactccaggcagctcgccacctactcagtggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gatcatctaccatgcgcccctgcccactactccaggcagctcgccacctactcagtggcg 315

                                                                       
Query: 181 cacccccagactgagctccccgccttccttcgggcaggaagttggcgctgaagagaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cacccccagactgagctccccgccttccttcgggcaggaagttggcgctgaagagaaagg 255

                                                                 
Query: 241 cggaatccgagcgctttgggctggagactttgcaagactggatgggggttctca 294
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 254 cggaatccgagcgctttgagctggagactttgcaagactggatgggggttctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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