Query= MSMg01no497_o10.b1 MSMg01no497_o10.b1 CHROMAT_FILE:
MSMg01no497_o10.b1 PHD_FILE: MSMg01no497_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:45 2005
(628 letters)
>mm_chr9_46452214_46453241
Length = 1028
Score = 942 bits (487), Expect = 0.0
Identities = 499/503 (99%)
Strand = Plus / Minus
Query: 1 taacccttagccaccgctcacagagtgtctactgaacagtgataggggtttcaaacctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taacccttagccaccgctcacagagtgtctactgaacagtgataggggtttcaaacctga 444
Query: 61 ctcagagaacagaacacagctcagcaatcccatctcaccgtcagcagtttgattcatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctcagagaacagaacacagctcagcaatcccatctcaccgtcagcagtttgattcatgtg 384
Query: 121 tctagatctaaacaaaggatgtttctggagatgtagaagattcatgttcagctttttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctagatctaaacaaaggatgtttctggagatgtagaagattcatgttcagctttttcct 324
Query: 181 agagattgtgagttgggataaaagcagctgtccctgtggaagggaagtgagtgggctacc 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agagattgtgagtcgggataaaagcagctgtccctgtggaagggaagtgagtgggctacc 264
Query: 241 actgttatgtcagattattgataggtgggatttttgcacgacaaagaacgttgtctctgt 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actgctaggtcagattattgataggtgggatttttgcacgacaaagaacgttgtctctgt 204
Query: 301 gtcctagtgttgtcaaacttaccacagtccagggtcatctgaaaggaaaacctccaccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtcctagtgttgtcaaacttaccacagtccagggtcatctgaaaggaaaacctccaccta 144
Query: 361 gaaattacttaactttttgtgggtatgtataggggctgggtcttggttgttaattgacag 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gaaattacctaactttttgtgggtatgtataggggctgggtcttggttgttaattgacag 84
Query: 421 aaaaaaagcccctcgcatttctggcaatactatgtcctgcaactagtcccaggctgtgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 aaaaaaagcccctcgcatttctggcaatactatgtcctgcaactagtcccaggctgtgta 24
Query: 481 agaaagctagctaagcatgagcc 503
|||||||||||||||||||||||
Sbjct: 23 agaaagctagctaagcatgagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_o10.g1 MSMg01no497_o10.g1 CHROMAT_FILE:
MSMg01no497_o10.g1 PHD_FILE: MSMg01no497_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:45 2005
(595 letters)
>mm_chr9_46302201_46303194
Length = 994
Score = 795 bits (411), Expect = 0.0
Identities = 507/579 (87%), Gaps = 65/579 (11%)
Strand = Plus / Plus
Query: 51 tttttgattaccgatttatcattaaatgagggaaactttgctgtctgcatgggattttgg 110
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 251 tttttgattaccgatttatcattaaatgaggggaactttgctgtctgcatgg-attttgg 309
Query: 111 atgtggagcagaagccaccagggattctcctatgatggcatcagtgtgaggtcttttatg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgtggagcagaagccaccagggattctcctatgatggcatcagtgtgaggtcttttatg 369
Query: 171 acttctgtctcactggacaactgacaatggcagctgcagacaagcctgtgttacagagcc 230
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 370 acttctgtctcactggacaactgacaatggcagctgcagacaagcctgtggtacagagcc 429
Query: 231 tttgtgttct--tcntcacttcatagatgggctgcctcttataaatgtgactttcagtgt 288
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttgtgccctgctc--cacttcatagatgggctgcctcttataaatgtgactttcagtgt 487
Query: 289 gactcctcacactgtgctatccctgtttttgtcatggccaaacaggctcaggatggctgc 348
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 gactcctcacactgcgctatccctgtttttgtcatggccaaacaggctctggatggctgc 547
Query: 349 cactggcagtccacatctatccatccatccatccatccatccatccatccatccatccat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cactggcagtccacatctatccatccatccatccatccatccatccatccatccatccat 607
Query: 409 ccatccatccatccatccatccatccattgtctttataatctctttcttctctccccctc 468
||||||||||||||||||||||||||||||||
Sbjct: 608 ----------------------------tgtctttataatctctttcttctctccccctc 639
Query: 469 tctcctgtatctatccatctatcatgtatctgtccatccatccatc-------------- 514
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 640 tctcctgtatctatccatctagcatgtatctgtccatccatccatccatccatccatcca 699
Query: 515 ------------------tatcatctttataatctctctcttccctcccctctctcctgt 556
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tccatccatccatccatctatcatctttataatctctctcttccctcccctctctcctgt 759
Query: 557 atctatccatctatcttttcatctatttaccccttgctt 595
|||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atctatccatctatcttttcatctatttaccccttgctt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
