BAC Information

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BAC

Clone NameMSMg01-498C13
Chromosome9 (Build37)
Map Location 62,685,765 - 62,768,146
singlet/doubletdoublet
Overlap geneCln6, Calml4, Pias1
Upstream geneRplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b
Downstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498C13.T7 (MSMg01no498_c13.b1)MSMg01-498C13.TJ (MSMg01no498_c13.g1)
ACCAG574552AG574553
length759782
length of high quality
(start - end)		677 (71 - 747)557 (84 - 640)
definitionCHROMAT_FILE: MSMg01no498_c13.b1 PHD_FILE: MSMg01no498_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:05 2005CHROMAT_FILE: MSMg01no498_c13.g1 PHD_FILE: MSMg01no498_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,685,765 - 62,686,440)(62,767,634 - 62,768,146)
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGN
GGAANNNNGGNCGTTCCCTCTGCCTGGAGCTCTTTCCTGCCTCCAGTTCA
TACTTCTCTGTCAGCTATCCTTCCTGTGATGCCTGTTTGGCCTTACTGCC
TCTATGGCTACACAACCCTCAGAACTTCCTCCACCATTACCAGAAGCTAC
GAACAGAAGCGCTTCTGAACAGGGCTCATAGGTTCCTGCACAGAACTTAC
GAGGTTCTTAACACAATTGAATGAGGAAGGGGTGTGTGTCTTTCCCCAAC
GCCAGGACTGGATTCTGGACCACCTCGTTGTCCTCCAACTAGGAGAGAAT
TCACTATTCTCTTCACCTATCAAAGCACAGTGGATAGTTTATCAAGCAGT
CTTTAATCTGAGGAAGGAGGGCTCAAAGACCCCGGGTCTTCTGATGACCT
CACAGCTTGGTCATTCCAGGTCCCCGGTTCACCTTCGTCCAGTACCCTCA
AGCCCGGCTAGGCAAGGCTTCCTTCCTGCAGAAATGCAGAGAACCCAGGA
AAAAAACAAAAGCAAGCAAACAAACAAACAAATAAGACGCCAGGCTTCCC
CACTGGAGTGCAGATTCAACTAAGACCCAAGACCTCTGGGACATAAGTTA
GGCCCCTCCTTCTCAAACAAAACACGCCCTCCAGCTGTCTCCCTCCACCT
CCGCTCTCTCATTCCTCCTCCCTCCTCCCCACACTCCATCCTCCTCCCCG
GTCTTGCCC

NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTACCACAAGGAGAC
ATTTTCTATGTGTCTGTATGTCATTATATGTGATGAGGTGAGGCTCGCTG
ACATAGGTTAGCAGTTTTGATATGGAGAGAAAATTGTAGAATTTTGAGTT
AGCCATAGTAGCATCTGTGTTACACTTTGTTTGGGGGATGCATATCATCA
GTGTCTCCCAGCTGAACTCCTGTGACTGTGCCTGTGGGAGAGCAGGGTTT
GAGATGCTGCCCTGCCTTATATGGGTTGGGGTGGGAGCTGTGTTTGGTCC
CCTCAGAAATGTTTCTTGTATACCTCTTTAAGACATTATAAACACAGGGC
TGGTGAGATGGCTCAGTGGGTAAGAGTACCCGACTGCTCTTCCAAAGGTC
CAGTGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACA
AGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTA
CATATAATAAATAAATAAATCTTTAAAAAAAAAAGACATTATAAACTCAC
TCTGATTCTTAAATTAAGAGAGTTTGAATTTCTGTCACTGGGGGAAAGGG
GGAGGGGATTTTTCTTNTGTTATTTTTTAAAGGGGGATATTTTTTTAAGG
GGAATTTTTAAAAATTTAATTAAAAAAGTAAATCTATTAATGGGTTTTTT
TTTTCTTTTAATTAAAAAATGGGGGTGAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_c13.b1 MSMg01no498_c13.b1 CHROMAT_FILE:
MSMg01no498_c13.b1 PHD_FILE: MSMg01no498_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:05 2005
         (677 letters)



>mm_chr9_62685565_62686641
          Length = 1077

 Score = 1284 bits (664), Expect = 0.0
 Identities = 673/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctggagctctttcctgcctccagttcatacttctctgtcagctatccttcctgtgat 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctggagctctttcctgtctccagttcatacttctctgtcagctatccttcctgtgat 260

                                                                       
Query: 61  gcctgtttggccttactgcctctatggctacacaaccctcagaacttcctccaccattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtttggccttactgcctctatggctacacaaccctcagaacttcctccaccattac 320

                                                                       
Query: 121 cagaagctacgaacagaagcgcttctgaacagggctcataggttcctgcacagaacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagctacgaacagaagcgcttctgaacagggctcataggttcctgcacagaacttac 380

                                                                       
Query: 181 gaggttcttaacacaattgaatgaggaaggggtgtgtgtctttccccaacgccaggactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggttcttaacacaattgaatgaggaaggggtgtgtgtctttccccaacgccaggactg 440

                                                                       
Query: 241 gattctggaccacctcgttgtcctccaactaggagagaattcactattctcttcacctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattctggaccacctcgttgtcctccaactaggagagaattcactattctcttcacctat 500

                                                                       
Query: 301 caaagcacagtggatagtttatcaagcagtctttaatctgaggaaggagggctcaaagac 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagcacagtggatagtttatcgagcagtctttaatctgaggaaggagggctcaaagac 560

                                                                       
Query: 361 cccgggtcttctgatgacctcacagcttggtcattccaggtccccggttcaccttcgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccgggtcttctgatgacctcacagcttggtcattccaggtccccggttcaccttcgtcc 620

                                                                       
Query: 421 agtaccctcaagcccggctaggcaaggcttccttcctgcagaaatgcagagaacccagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaccctcaagcccggctaggcaaggcttccttcctgcagaaatgcagagaacccagga 680

                                                                       
Query: 481 aaaaaacaaaagcaagcaaacaaacaaacaaataagacgccaggcttccccactggagtg 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aaaaaacaaaagcaagcaaacaaacaaacaaacaagacgccaggcttccccactggagtg 740

                                                                       
Query: 541 cagattcaactaagacccaagacctctgggacataagttaggcccctccttctcaaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagattcaactaagacccaagacctctgggacataagttaggcccctccttctcaaacaa 800

                                                                       
Query: 601 aacacgccctccagctgtctccctccacctccgctctctcattcctcctccctcctcccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacacgccctccagctgtctccctccacctccgctctctcattcctcctccctcctcccc 860

                           
Query: 661 acactccatcctcctc 676
           ||||||||||||||||
Sbjct: 861 acactccatcctcctc 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_c13.g1 MSMg01no498_c13.g1 CHROMAT_FILE:
MSMg01no498_c13.g1 PHD_FILE: MSMg01no498_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:05 2005
         (557 letters)



>mm_chr9_62767634_62768590
          Length = 957

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaccacaaggagacattttctatgtgtctgtatgtcattatatgtgatgaggtgagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 513 cagtaccacaaggagacattttctatgtgtctgtatgtcattatatgtgacgaggtgagg 454

                                                                       
Query: 61  ctcgctgacataggttagcagttttgatatggagagaaaattgtagaattttgagttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctcgctgacataggttagcagttttgatatggagagaaaattgtagaattttgagttagc 394

                                                                       
Query: 121 catagtagcatctgtgttacactttgtttgggggatgcatatcatcagtgtctcccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catagtagcatctgtgttacactttgtttgggggatgcatatcatcagtgtctcccagct 334

                                                                       
Query: 181 gaactcctgtgactgtgcctgtgggagagcagggtttgagatgctgccctgccttatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaactcctgtgactgtgcctgtgggagagcagggtttgagatgctgccctgccttatatg 274

                                                                       
Query: 241 ggttggggtgggagctgtgtttggtcccctcagaaatgtttcttgtatacctctttaaga 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gggtggggtgggagctgtgtttggtcccctcagaaatgtttcttgtatacctctttaaga 214

                                                                       
Query: 301 cattataaacacagggctggtgagatggctcagtgggtaagagtacccgactgctcttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cattataaacacagggctggtgagatggctcagtgggtaagagtacccgactgctcttcc 154

                                                                       
Query: 361 aaaggtccagtgttcaaatcccagcaaccacatggtggctcacaaccatccgtaacaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aaaggtccagtgttcaaatcccagcaaccacatggtggctcacaaccatccgtaacaaga 94

                                                                       
Query: 421 tctgacgccctcttctggtgtgtctgaagacagctacagtgtacttacatataataaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tctgacgccctcttctggtgtgtctgaagacagctacagtgtacttacatataataaata 34

                                            
Query: 481 aataaatctttaaaaaaaaaagacattataaac 513
           |||||||||||||||||||||||||||||||||
Sbjct: 33  aataaatctttaaaaaaaaaagacattataaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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