BAC Information

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BAC

Clone NameMSMg01-498E09
Chromosome9 (Build37)
Map Location 60,625,974 - 60,626,550
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo9a, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
Downstream geneUaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498E09.T7 (MSMg01no498_e09.b1)MSMg01-498E09.TJ (MSMg01no498_e09.g1)
ACCAG574639AG574640
length1,334789
length of high quality
(start - end)		---573 (85 - 657)
definitionCHROMAT_FILE: MSMg01no498_e09.b1 PHD_FILE: MSMg01no498_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:14 2005CHROMAT_FILE: MSMg01no498_e09.g1 PHD_FILE: MSMg01no498_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTATTGAGGTGGGGTGATGCTTTCACTCTCTTGATGTGTGAAACTGAAG
ATACTCATCTCACTCCACAATATAGAACAACATGCAGCGGACGCTCGCGT
ATATATAGAGGACGATATTATTTCGTGCACCGAAATAGAGGNGTCGCGTC
GTTCTGGCACGATGCTGTTTTCGTCACGCGCTCCTGTCGGCGCGGAGCGT
ANTAGCGCGGCGTATACAACGTAGTGGCGCCACACNGACGCGGCGTAGAG
CGCGATATACGACTCGGGTCAATAGCTTCCATAGTAATCGTGACACGCCA
AACCAGATCTCATGGTATTTCCTTACTCAGCCTCACTTTATCGCATTAGA
TTAGGATAGTATAACACAATAGATGATTATGCAGTCTTGTGACTTTACTG
ACGGGTCTCGTGTCTTTCGCGGCGTGTGTATAGATAGGNGTAGGGGATTG
TGACAACAGATATGTTGGTACCACGCTTTTCTGTCTCTCTTTCCGCGNCG
CGATTATTTACACTAGAACATTTATGTATCATTCNTAGCGGGAGCGTTTG
CTCCACATCGATCATTTCACGCGACACATGGCTGTACTATANTGTCCGAG
TATGGCGGTCTCTGTTTGAGCCGGCTCTTACTTGTTATCGACACCTGCGC
TCCCCCCTCGTTCTCGTCGCCGTTGTGGTCGTTGTGCTCGATATCGCACC
CTCTTGTCGCGCCCCGTAACACTCCGCCGCGCTAATACTAGCCCGTTTAT
GAATACACTGACACTCGAGATATCAATATCAATCTCTCATCAGACGAAAT
GAATAAAGAACAGACTAAGCACGAAATCAGTTACACTTCACTGCGACCGA
TTGAATGGATTATAGTGTAATATATCGTGTACGCGATGGACTCTACCGCT
GAGCGCGACATGCCGCAGACATAANTTGATCTGTGTGATGTTTACATGTT
TACACGGTGTCGACTGATGACACACGATCATAAGTATGGTGTCCTGTCCA
TATCATATTTGCGCTGCCAACTGATGACGAAGTCCGCAGCATCAGATGAA
TGCTACATGCGCAGCGATCTGCGTCTCGCCAAACCACATAAGTACACCTA
CAAGTGATGGGTCACGCTATATCTTGAGTCGTCGTATATCGACATCATAT
ATAACTTCATATGACTCCGTCTGTATTGGGTGTTACAATAGACTACACGT
CGTCTCGATGACTCTCCGTATTCGTCTATTNTCGTACCACNATAATCACT
CCTGNGTGCCGGCCAGCACGTGCGAGACCTGTATGTGATCTGACTACTAT
ACTGACGCGGACGTCACCATCTCATGTTGATTGN

NNNNNCCCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTGTGACAAAGTG
TTCAGCTTTTCCCAGTGTCTGGGAGTAGGCTCACATTCCTTAGCTTATGG
TCCCTTCCATCCTTGAAAACCAGCTCATGTCATGTCCCTCTCTGGTTCTG
AACTCAATCATAAAGGTTCTTTGTTTCAAGGAAGTATGATCAGATCCGGC
CCACCTGGATTCTCTCTCCACATCAAAGTCTTAAATATAGTCACATTTCT
AAAGGCTTTTTTTTTTTGTCACGCTTGGTCACTTCTTCCTAGGTGGGTCA
CCAACCTGCCTATCATATGCAATGACTGATACATAAATATGTTTGAAACA
CCAACCCTATATGGTTTTCATTATGACATTTACAAGTGTTTCCCTTTCTT
TTATGGTTTTCACAGGAGGGAAGGGCATAAAGGCAGCACGCAATAAACAT
CAGCTGAGCAGCTGAAGGCAAGCCTAGTCTTCCATGTGAGCTGCTGTAGC
AGAAATCTCTGTCAGCTCAGCAGACAACGCCTGAACCAAATGGGGCTCTG
TCTCCAGGAACACAGTCTATCTTCCATGTCTCTATCTTTAGCATGTCTCC
TCCCTCCAGCACCGTGAGCTCACGCCATAAGCTATATGAAACTGTCTGTG
ACATCCCCAACAGAACAATGAATGTTTAGGTTTTTAAATAATTTGAGGGT
CAATGATTTGGCTCTAGGGGAAAAAGCGCTTGCCACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_e09.g1 MSMg01no498_e09.g1 CHROMAT_FILE:
MSMg01no498_e09.g1 PHD_FILE: MSMg01no498_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:14 2005
         (573 letters)



>mm_chr9_60625774_60626750
          Length = 977

 Score = 1081 bits (559), Expect = 0.0
 Identities = 571/577 (98%), Gaps = 4/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtgtgacaaagtgttcagcttttcccagtgtctgggagtaggctcacattccttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaggtgtgacaaagtgttcagcttttcccagtgtctgggagtaggctcacattccttagc 718

                                                                       
Query: 61  ttatggtcccttccatccttgaaaaccagctcatgtcatgtccctctctggttctgaact 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 717 ttatggtcccttccatccttgaaaaccagctcatgtcatgtccccctctggttctgaact 658

                                                                       
Query: 121 caatcataaaggttctttgtttcaaggaagtatgatcagatccggcccacctggattctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caatcataaaggttctttgtttcaaggaagtatgatcagatccggcccacctggattctc 598

                                                                       
Query: 181 tctccacatcaaagtcttaaatatagtcacatttctaaaggc----tttttttttttgtc 236
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 597 tctccacatcaaagtcttaaatatagtcacatttctaaaggctttttttttttttttgtc 538

                                                                       
Query: 237 acgcttggtcacttcttcctaggtgggtcaccaacctgcctatcatatgcaatgactgat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acgcttggtcacttcttcctaggtgggtcaccaacctgcctatcatatgcaatgactgat 478

                                                                       
Query: 297 acataaatatgtttgaaacaccaaccctatatggttttcattatgacatttacaagtgtt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acataaatatgtttgaaacaccaaccctatatggttttcattatgacatttacaagtgtt 418

                                                                       
Query: 357 tccctttcttttatggttttcacaggagggaagggcataaaggcagcacgcaataaacat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tccctttcttttatggttttcacaggagggaagggcataaaggcagcacgcaataaacat 358

                                                                       
Query: 417 cagctgagcagctgaaggcaagcctagtcttccatgtgagctgctgtagcagaaatctct 476
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagctgagcagctgaaggtaagcctagtcttccatgtgagctgctgtagcagaaatctct 298

                                                                       
Query: 477 gtcagctcagcagacaacgcctgaaccaaatggggctctgtctccaggaacacagtctat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcagctcagcagacaacgcctgaaccaaatggggctctgtctccaggaacacagtctat 238

                                                
Query: 537 cttccatgtctctatctttagcatgtctcctccctcc 573
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 cttccatgtctctatctttagcatgtctcctccctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 977
Length adjustment: 10
Effective length of query: 563
Effective length of database: 967
Effective search space:   544421
Effective search space used:   544421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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