BAC Information

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BAC

Clone NameMSMg01-498E22
Chromosome9 (Build37)
Map Location 83,964,825 - 84,139,825
singlet/doubletdoublet
Overlap geneBckdhb
Upstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
Downstream geneEG666669, LOC666672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498E22.T7 (MSMg01no498_e22.b1)MSMg01-498E22.TJ (MSMg01no498_e22.g1)
ACCAG574665AG574666
length792792
length of high quality
(start - end)
589 (45 - 633)465 (57 - 521)
definitionCHROMAT_FILE: MSMg01no498_e22.b1 PHD_FILE: MSMg01no498_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:16 2005CHROMAT_FILE: MSMg01no498_e22.g1 PHD_FILE: MSMg01no498_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,139,396 - 84,139,825)(83,964,825 - 83,965,289)
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAAGCCAGATGTGTCCAAGAAAACTTAGAAACAGCCTTCCTCCC
TATGATCAAATTATTATATAGTAAATTGAACCGTAACAGAAGTGCATTAG
AAGCCTGGAAGCATAAATATAGCACATCTCTCACCAAAGTGATAGCTACT
CCTCCCAACTCATCAGCATGGTTAAGGTGAATGCGTCTTCCTGAGAGATT
CTTTGGCCAGGTGGATTAACTTATTTTTTTAATATTAATTTTTGGCATTT
TGGAGATTATAATAAAATTATATTTTCCCCCTTCTCCTTCCTCCTTCTAA
ACTTTCCTACATTGCAGCCTCTTGCTTGCTTTCAAATCATAATAGTTATT
CATTAATTATTATTGTTTGAATATATGTATATGGATATATATTCATATAC
ATATATATATTCCTAAATATAATCTTTTTGGTCTGTAGAATGTTACTTGT
ATGTATGTTTTCAGAATTGACCATTTAGCACTGGAAAACCAATTGGTGTG
CTCTTCACTAGTGGATTAACTTTAAAGGGAAAAGAGAATTACATATCTCC
ACTCAGAGGCAGATTTCAATATTTTGGGTAGGAGACAATAAAGCTTTCCC
TTAATGGTCTTTCCATATCTCTGTAACATTCCCTCCTTTTGAAGAGATAG
CTCACAAATAATTTACCAGATAAGCTTGAACTTGGGGGAATGGACAGAAC
CCATCTTTTACCATGAAAATCTCGATGCTCTGTTTCCGAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTATAAAATTGCGTGTTTCTATAAAGAAATCATTCAATGAGTG
AACTACAAGGTGAATTAGGTAATGCTGTAAAATTTGTAGGGGATTTGCAT
CTAATTAGAACTTTGTTTCATCTTAATTCGTTTTATTTGTCTAGACACAG
AATGCAGAAAATGAATTTAAATAGGTCTTACCAGAGAGTATATTTGCCTC
TTACTGCTTTTACTGATTGATGAAGGAAGTTACAGATATGGGCTTTGTCC
TTTTTAGTAATATGTTTAAGAACAAGCTGATGTGGTTTTAGCAGTTGTTT
TTCACGGGTGCAGCTACAGGAGGTGGGCACTCAAAGCCTCCTGTCAGTGA
AACCTGGATCAGGTTACTGGTGCCATGGGCTGCTTGAATTGGTGTCACTG
AAGTGAGTTTCAGCTGCTTTCACCACTTGGAGTGATTCATACTTCTACAT
TTCTTTTTGATGTTTGGACCTTGTAAGGTTAGCAAAGATGAAACCAGGTT
ATGGTATTGAAAGTCAGCCTTCCGAGCTGCAGAGAAAGGAAGTGTCCGAG
GGAAAACTTTTCATTCTCTTTGTGAGAAAGAAGCTTGAACTGTAAATGAG
GGTGGACCCTGNAATTGATCACTCCTTGCTAAATATCTGCTTCTCATGTA
TCGGAGAAACTAAAGTTTCTTTGAATTTCAAATAAAAAGTTGACCCACCT
GGTATTATGATAGCATTGTAACAGTTTATAGAACCATGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_e22.b1 MSMg01no498_e22.b1 CHROMAT_FILE:
MSMg01no498_e22.b1 PHD_FILE: MSMg01no498_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:16 2005
         (589 letters)



>mm_chr9_84139396_84140388
          Length = 993

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/430 (98%), Gaps = 4/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcaagccagatgtgtccaagaaaacttagaaacagccttcctcc----ctatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 430 gaattctgcaagccagatgtgtccaagaaaacttagaaacagccttcctccctggctatg 371

                                                                       
Query: 61  atcaaattattatatagtaaattgaaccgtaacagaagtgcattagaagcctggaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atcaaattattatatagtaaattgaaccgtaacagaagtgcattagaagcctggaagcat 311

                                                                       
Query: 121 aaatatagcacatctctcaccaaagtgatagctactcctcccaactcatcagcatggtta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaatatagtacatctctcaccaaagtgatagctactcctcccaactcatcagcatggtta 251

                                                                       
Query: 181 aggtgaatgcgtcttcctgagagattctttggccaggtggattaacttatttttttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aggtgaatgcgtcttcctgagagattctttggccaggtggattaacttatttttttaata 191

                                                                       
Query: 241 ttaatttttggcattttggagattataataaaattatattttcccccttctccttcctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttaatttttggcattttggagattataataaaattatattttcccccttctccttcctcc 131

                                                                       
Query: 301 ttctaaactttcctacattgcagcctcttgcttgctttcaaatcataatagttattcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ttctaaactttcctacattgcagcctcttgcttgctttcaaatcataatagttattcatt 71

                                                                       
Query: 361 aattattattgtttgaatatatgtatatggatatatattcatatacatatatatattcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aattattattgtttgaatatatgtatatggatatatattcatatacatatatatattcct 11

                     
Query: 421 aaatataatc 430
           ||||||||||
Sbjct: 10  aaatataatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 993
Length adjustment: 10
Effective length of query: 579
Effective length of database: 983
Effective search space:   569157
Effective search space used:   569157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no498_e22.g1 MSMg01no498_e22.g1 CHROMAT_FILE:
MSMg01no498_e22.g1 PHD_FILE: MSMg01no498_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:17 2005
         (465 letters)



>mm_chr9_83964625_83965489
          Length = 865

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attataaaattgcgtgtttctataaagaaatcattcaatgagtgaactacaaggtgaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attataaaattgcgtgtttctataaagaaatcattcaatgagtgaactacaaggtgaatt 260

                                                                       
Query: 61  aggtaatgctgtaaaatttgtaggggatttgcatctaattagaactttgtttcatcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaatgctgtaaaatttgtaggggatttgcatctaattagaactttgtttcatcttaa 320

                                                                       
Query: 121 ttcgttttatttgtctagacacagaatgcagaaaatgaatttaaataggtcttaccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgttttatttgtctagacacagaatgcagaaaatgaatttaaataggtcttaccagag 380

                                                                       
Query: 181 agtatatttgcctcttactgcttttactgattgatgaaggaagttacagatatgggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatatttgcctcttactgcttttactgattgatgaaggaagttacagatatgggcttt 440

                                                                       
Query: 241 gtcctttttagtaatatgtttaagaacaagctgatgtggttttagcagttgtttttcacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctttttagtaatatgtttaagaacaagctgatgtggttttagcagttgtttttcacg 500

                                                                       
Query: 301 ggtgcagctacaggaggtgggcactcaaagcctcctgtcagtgaaacctggatcaggtta 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgcagctacaggaggtgggcactcacagcctcctgtcagtgaaacctggatcaggtta 560

                                                                       
Query: 361 ctggtgccatgggctgcttgaattggtgtcactgaagtgagtttcagctgctttcaccac 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtgccacgggctgcttgaattggtgtcactgaagtgagtttcagctgctttcaccac 620

                                                        
Query: 421 ttggagtgattcatacttctacatttctttttgatgtttggacct 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggagtgattcatacttctacatttctttttgatgtttggacct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)