BAC Information

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BAC

Clone NameMSMg01-498J01
Chromosome9 (Build37)
Map Location 22,100,329 - 22,100,938
singlet/doubletsinglet
Overlap geneZfp810
Upstream geneAp1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092
Downstream geneLOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498J01.T7 (MSMg01no498_j01.b1)MSMg01-498J01.TJ (MSMg01no498_j01.g1)
ACCAG574859AG574860
length732711
length of high quality
(start - end)
607 (55 - 661)536 (59 - 594)
definitionCHROMAT_FILE: MSMg01no498_j01.b1 PHD_FILE: MSMg01no498_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:39 2005CHROMAT_FILE: MSMg01no498_j01.g1 PHD_FILE: MSMg01no498_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCCTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACACAGCTTGCAATTCCTAATAACATGAAGAATGCA
GGAACCTTTTCTCTTGCAAGTCACAGCTCTGTACATCAGAAATGTCATGC
AGGACATAAACAATATGAATGCAAAGCTTTCTTGAGAAAGTATGACTTTG
CTTGACATCAACGGATTCATACAGATGAGAAACCTAATGAATATGGAAAT
ATAGGGAAGCCTTCCTTTACAAGTCATGCATGCGTACACCACAGACTCTG
CGTAGGAGAGGAGCTCTATGAAGGTAACGACTGTAGGAAAGCCTTCTATC
AAAGCCAGACCTCATTGTGCATCAGATAATTCAGAAGGGAAGAACCCTAA
TGTAAGGGTGTAAGGATGAAGGAAATATTTCTCTCTCAGGTCAAAACTAT
ATTAGAGAATACATAAGGGGAGAAACTCTATGACTAAGGAATATAAAAAG
CTTTCTGCCCAGACAGAATTCATTGCACATCAGAGAGCATGCACATGACC
TTTGGATATAAAGACTACAGGAAAGCTTTCTATTGCAAGCCACAACTTCC
ATGGCATGAGGGATCCCTTCCAGGCTCTAAGACTGTGAGGAATTCAGGGC
ATAACTCAGTGTGCACCAGATCACTCATTTCTGGTTAGAATCTGTATGAA
GACAGATGGAGGAAGGTGTTCATATACAAGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTATAGGATCATTATTAAGACTTAAGATGTCATCTATTGGGC
TGGAGAGATGGCTCAGTGGTTAGGAGCACTGACTGCTCTTCCAAAGGTCC
TGAGTTTGATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGA
GATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTAC
ATATAAATAAATAAATCTTTAAAAAAAAGATGTCATCTATTTGTCTATAT
AGCATCACTACAAGACAGTACATCTGCAGAGATCTGCTCAAGAGGGTGGG
CTAACACCTAGTAATTGTTATGTATGTTTAATAACAGGAAAAGCATTTTA
ATAGCAGGAATCGTTCCTAAAATGATTTTCTCCTGGGCCTTGCCTTTAGG
GGCAAATCTGTCGTGGTCTATAATCCCAGGCACACCATCTCAGGAAGATC
ACCTGCTAGTTATGAGCTTGTTCTGTTATGGCTCCTGACAACAGTGTCAT
ACACTAATTGTTGGTGTCCTGTTAGAAAGTCATTTTCTGCGCTGTGAATT
CATGCTTGTTCCCAGGTTTCTCTTCTATCAGACCCAGTGGATCTGGCCTT
TTGTTGAGGTCCTTAACCATTTGTAGTGGAGTTTTGTTCATGGTGATAAA
TATGGATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_j01.b1 MSMg01no498_j01.b1 CHROMAT_FILE:
MSMg01no498_j01.b1 PHD_FILE: MSMg01no498_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:39 2005
         (607 letters)



>mm_chr9_22099974_22100980
          Length = 1007

 Score = 1081 bits (559), Expect = 0.0
 Identities = 595/611 (97%), Gaps = 9/611 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacagcttgcaattcctaataacatgaagaatgcaggaaccttttctcttgca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gaattcacacagcttggaattcctaataacatgaagaatgcaggaaccttttctcttgca 906

                                                                       
Query: 65  agtcacagctctgtacatcagaaatgtcatgcaggacataaacaatatgaatgcaaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 agtcacagctctgtacatcagaaatgtcatgcaggacataaacaatatgaatgcaaagct 846

                                                                       
Query: 125 ttcttgagaaagtatgactttgcttgacatcaacggattcatacagatgagaaacctaat 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttcttgagaaagtctgactttgcttgacatcaacggattcatacagatgagaaacctaat 786

                                                                       
Query: 185 gaatatggaaatatagggaagccttcctttacaagtcatgcatgcgtacaccacagactc 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaatatggaaatgtagggaagccttcctttacaagtcatgcatgcgtacaccacagactc 726

                                                                       
Query: 245 tgcgtaggagaggagctctatgaaggtaacgactgtaggaaagcctt-ctatcaaagcca 303
           |||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct: 725 tgcgtaggcgaggagctctatgaaggtaacgactgtaggaaagccttcct-ccaaagcca 667

                                                                       
Query: 304 gacctcattgtgcatcagataattcagaagggaagaaccctaatgtaagggtgtaaggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gacctcattgtgcatcagataattcagaagggaagaaccctaatgtaagggtgtaaggat 607

                                                                       
Query: 364 gaaggaaatatttctctctcaggtcaaaactatattagagaatacataaggggagaaact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaaggaaatatttctctctcaggtcaaaactatattagagaatacataaggggagaaact 547

                                                                       
Query: 424 ctatgactaaggaatataaaaagctttctgcccagacagaattcattgcacatcagagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctatgactaaggaatataaaaagctttctgcccagacagaattcattgcacatcagagag 487

                                                                       
Query: 484 catgcacatgacctttggatataaagactacaggaaagctttctattgcaagccacaact 543
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cacgcacatgccctttggatataaagactacaggaaagctttctattgcaagccacaact 427

                                                                       
Query: 544 tccatggcatgagggatcccttccaggctctaa-------gactgtgaggaattcagggc 596
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 426 tccatggcatgagggatcccttccaggctctaagccttatgactgtgaggaattcagggc 367

                      
Query: 597 ataactcagtg 607
           |||||||||||
Sbjct: 366 ataactcagtg 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)