TTTTTTTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGTCTAGCATTTACTATCTTTATAAAGCACAGAT
ACTGACTTTGAAGCGGTTATAACTACTGTCCCTTATAGCTTCTTCCTCCA
AAGGCAGCTGTATTTCTGTTATCCTCATGTCTTTATGATCATATACAAAG
TCTGTGATCTGTCAACTCAGGGGCTCCAGAGTTGTGTGGCAGCTTATTCA
TGTCACTCCTGATAAAATACACAAATGCCAACTCCTGTCATTCATGTGCA
GGTAGACCTCATATTTCAAGTACCTAAACACTGTAAAATATTGAAAGGTA
AAATATTGAAAACCGTAATGTAGCAGTCATCATTCAAAGGCACTCAGGTG
AATTATTTAAGGTAATCAATAGGATATCCCAGCCCCAACCTGCTCAGAGT
CATTCCCCTCTGGATTACTTTATAGGGAAACACAACTTTAAATAAGACAC
ATTTATAAGTGACAATCCCAGCTTAATGTCTTTCATCTTGATCTCATCTT
AATGCTTGAAAGGACAGTTATTTTATTCTTTTAATATTTCAAAATTAATA
AATGATGATATAGTCTACCCTTATTATGAACTAATTTAGCACCTTTATTC
TTCACACTCAAATAATGAAGCATGACCATATTTATAGGAAGCCTAGGAAT
ATACATGGATAGGTCTGCTTATCCCTTCACTGCACG

CCTTCCATTTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACACACCCAGAA
TCTCAGGTTCACAGGAGCCCACAAGCAAAGGATCACAGACAAAGCTGGAC
TTTGAGGAGTCCTGAATCAACTGGGATTATAGGAAGGACAGGCTCCAATC
AGATTGAGGACAACAAATACTTGAGATAATCAGATGGCAGGACGCAAGCG
CAAGAACAGAAGCAACAGAAACCAAGGTTACTTGGGCATCATCAGAACCA
AACTCTCCTACCATAACAAGTCCTGGATACACCATCACACCAGAAAAGCA
AGACATGGATCTAAATTCACTTCTTATGTTGATGATGGAGGACCTTAAGA
AGGAAATAAAGGAAGACACAGGTAAACAGCTAGAAGCCTTTAAAGAGGAG
ACACAAAAATGCTTTAGAGAGTTCCAGGAAAACAATACCAAAAAGGAGAT
GGAATTGAACAAAACCATCCAGGATCTAAAAAGGTAAATAGAAACAATAA
AGAAAACCCAAAGAGTGACAACTCTGGAGATAGAAACCCCAGGAAAGAAA
TCTGGAACCATAGATTCGAGCATCAGCAACAGAATACAAGAGATGGAAGA
GAGACTCTCAGGTGCAGAAGATTCTATAGGGAACATGGACACAAAAATAC
ATGAAAATGCAAAATGCAAAAAGCAAAGGGATCCTAACT

Query= MSMg01no498_j02.b1 MSMg01no498_j02.b1 CHROMAT_FILE:
MSMg01no498_j02.b1 PHD_FILE: MSMg01no498_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:40 2005
         (680 letters)



>mm_chr9_73325842_73326921
          Length = 1080

 Score = 1284 bits (664), Expect = 0.0
 Identities = 673/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtctagcatttactatctttataaagcacagatactgactttgaagcggttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcagtctagcatttactatctttataaagcacagatactgactttgaagcggttat 652

                                                                       
Query: 65  aactactgtcccttatagcttcttcctccaaaggcagctgtatttctgttatcctcatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aactactgtcccttatagcttcttcctccaaaggcagctgtatttctgttatcctcatgt 592

                                                                       
Query: 125 ctttatgatcatatacaaagtctgtgatctgtcaactcaggggctccagagttgtgtggc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 591 ctttatgatcatatacaaagtctgtgatctgtcaactcaggggctccagagttgtgtgac 532

                                                                       
Query: 185 agcttattcatgtcactcctgataaaatacacaaatgccaactcctgtcattcatgtgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agcttattcatgtcactcctgataaaatacacaaatgccaactcctgtcattcatgtgca 472

                                                                       
Query: 245 ggtagacctcatatttcaagtacctaaacactgtaaaatattgaaaggtaaaatattgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggtagacctcatatttcaagtacctaaacactgtaaaatattgaaaggtaaaatattgaa 412

                                                                       
Query: 305 aaccgtaatgtagcagtcatcattcaaaggcactcaggtgaattatttaaggtaatcaat 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaccttaatgtagcagtcatcattcaaaggcactcaggtgaattatttaaggtaatcaat 352

                                                                       
Query: 365 aggatatcccagccccaacctgctcagagtcattcccctctggattactttatagggaaa 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggatatcccagccacaacctgctcagagtcattcccctctggattactttatagggaaa 292

                                                                       
Query: 425 cacaactttaaataagacacatttataagtgacaatcccagcttaatgtctttcatcttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cacaactttaaataagacacatttataagtgacaatcccagcttaatgtctttcatcttg 232

                                                                       
Query: 485 atctcatcttaatgcttgaaaggacagttattttattcttttaatatttcaaaattaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 atctcatcttaatgcttgaaaggacagttattttattcttttaatatttcaaaattaata 172

                                                                       
Query: 545 aatgatgatatagtctacccttattatgaactaatttagcacctttattcttcacactca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aatgatgatatagtctacccttattatgaactaatttagcacctttattcttcacactca 112

                                                                       
Query: 605 aataatgaagcatgaccatatttataggaagcctaggaatatacatggataggtctgctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aataatgaagcatgaccatatttataggaagcctaggaatatacatggataggtctgctt 52

                           
Query: 665 atcccttcactgcacg 680
           ||||||||||||||||
Sbjct: 51  atcccttcactgcacg 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)