Query= MSMg01no498_k18.b1 MSMg01no498_k18.b1 CHROMAT_FILE:
MSMg01no498_k18.b1 PHD_FILE: MSMg01no498_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:48 2005
(445 letters)
>mm_chr9_85701615_85702459
Length = 845
Score = 810 bits (419), Expect = 0.0
Identities = 438/449 (97%), Gaps = 8/449 (1%)
Strand = Plus / Plus
Query: 5 gaattctcattcattttagaaaggggaaagaactgtgaattgaaagtaccccatggagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattcattttagaaaggggaaagaactgtgaattgaaagtaccccatggagga 264
Query: 65 aacactcactttccaacaaattgtaggtggttttgtaaattagattcacctcgagatgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacactcactttccaacaaattgtaggtggttttgtaaattagattcacctcgagatgtt 324
Query: 125 tcaatccacatattactttctgttattgatttattgaacttgtcatattatctctctgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaatccacatattactttctgttattgatttattgaacttgtcatattatctctctgtg 384
Query: 185 aaatttatcctttatgagaaaatcttctctaaataaagaagtttccacttcatataatag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatttatcctttatgagaaaatcttctctaaataaagaagtttccacttcatataatag 444
Query: 245 tattatttttattcaattactgggtcctttgcttctgtctaaaaacatatggaaggcttt 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tattatttttattcaattactgggtcctttgcttctgcctaaaaacatatggaaggcttt 504
Query: 305 ctctgttctgtgggg--------gggtgggaaagaagaaagaaattcttttatggatgct 356
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgttctgtggggtgggggtggggtgggaaagaagaaagaaattcttttatggatgct 564
Query: 357 gtgtcctacgaaacaaatggtttatgtctttccttccattccttaaagatgtgcgtgtgt 416
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 gtgttctacgaaacaaatggtttatgtctttccttccattccttaaagatgtgtgtgtgt 624
Query: 417 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 445
|||||||||||||||||||||||||||||
Sbjct: 625 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_k18.g1 MSMg01no498_k18.g1 CHROMAT_FILE:
MSMg01no498_k18.g1 PHD_FILE: MSMg01no498_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:48 2005
(616 letters)
>mm_chr9_85859150_85860165
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 613/616 (99%)
Strand = Plus / Minus
Query: 1 ttgggacagcaaggaaagatctagcacctctaagtacgaaacagagcatctcaaattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttgggacagcaaggaaagatctagcacctctaagtacgaaacagagcatctcaaattaaa 716
Query: 61 gagataaaattgccggcgcttgcgtgcatctagataatttgttaatgagataattgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gagataaaattgccggcgcttgcgtgcatctagataatttgttaatgagataattgaaag 656
Query: 121 ttgccagagaacagttttgttctgctctgttttgttttcatttcaaaatatgtggggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttgccagagaacagttttgttctgctctgttttgttttcatttcaaaatatgtggggtgt 596
Query: 181 tttatgtttgatttagatgccaggactctgaggtacagaacacccaccggtcagcaattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttatgtttgatttagatgccaggactctgaggtacagaacacccaccggtcagcaattc 536
Query: 241 attagggaactagcatgaactgggaaccagcacgaactggaagctcaaaggactccccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 attagggaactagcatgaactgggaaccagcacgaactggaagctcaaaggactccccag 476
Query: 301 caattcctagttattttgtttatttcagttctaaacactctcccttcaccactctggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caattcctagttattttgtttatttcagttctaaacactctcccttcaccactctggaaa 416
Query: 361 atttctgtactgcaaatatgtattttttttcaattgaagtgacttaaaatgttattttga 420
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 415 atttctgtactgcaaatatgttttttttttcaattgaagtaacttaaaatgttattttga 356
Query: 421 ggaacttttcagaattgtatgacatctcttgaaatagctaacgacccctggggtgctgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggaacttttcagaattgtatgacatctcttgaaatagctaacgacccctggggtgctgta 296
Query: 481 aaattcaaataataaaagcattaaaaatagcagagaaaagtcacctgaagcaactgggga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 aaattcaaataataaaagcattaaaaatagcagagaaaagtcacctgaagcaactgggaa 236
Query: 541 tagaacttgctgtcttcttcctgtggaatatatgtacacatacacacacagtcacacagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tagaacttgctgtcttcttcctgtggaatatatgtacacatacacacacagtcacacagc 176
Query: 601 cacaacacacacacac 616
||||||||||||||||
Sbjct: 175 cacaacacacacacac 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
