Query= MSMg01no498_p02.b1 MSMg01no498_p02.b1 CHROMAT_FILE:
MSMg01no498_p02.b1 PHD_FILE: MSMg01no498_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:12 2005
(417 letters)
>mm_chr9_118196158_118196974
Length = 817
Score = 667 bits (345), Expect = 0.0
Identities = 400/423 (94%), Gaps = 8/423 (1%)
Strand = Plus / Plus
Query: 1 cattttttaaaggtacagacttttcctgatgggtagcaggagagaagatcaatatgaaca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct: 201 cattttttaaaggtacagactttccctgatgggtagcaggagagaagatcaatgtgaaga 260
Query: 61 ttctctgtttctgtttctgtggggaccttgtggcaagagctgggagtgtcaaggaagtaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttctctgtttctgtttctgtggggaccttgtggcaagagctgggagtgtcaaggaagtga 320
Query: 121 attctaccagtgacctggggtccgctggctgagaacctgacccagccagacacactgggc 180
|||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 321 attctaccagtgacctgggggccgctggctgagaacccaacgcagcctgacacactgggc 380
Query: 181 tcagctttgggatgccaggggcagagagattgatcttgagacagcccccgggtgctgttt 240
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcggctttgggatgtcaggggcagagagattgatcttgagacagccctcgggtgctgttt 440
Query: 241 taagctcccctcccccactgtcaccaccatgtgacagtttgagttcttaaggagctcatt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 taagctcccctcccccactgtcaccaccatgtgacagtttgagttcttaaggagctcagt 500
Query: 301 gcttacacatgaaagtattgatgcggagccttgaggcactgacgggttgaagctgctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttacacatgaaagtattgatgcggagccttgaggcactgacgggttgaagctgctttg 560
Query: 361 ctgc--------atgcctgtttattcaaacctggcttcttctctcttactacatacacgc 412
|||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 561 ctgctttgctgcatgcctgtttattcaaacctagcttctcctctcttactacatacacgc 620
Query: 413 gtg 415
|||
Sbjct: 621 gtg 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_p02.g1 MSMg01no498_p02.g1 CHROMAT_FILE:
MSMg01no498_p02.g1 PHD_FILE: MSMg01no498_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:12 2005
(236 letters)
>mm_chr9_118354067_118354702
Length = 636
Score = 418 bits (216), Expect = e-121
Identities = 231/236 (97%)
Strand = Plus / Minus
Query: 1 gattgctggctagagaggaagccttgaaggccatatgaacagtcaccaagaccaatccag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 436 gattgctggctagagaggaagccttgaaggccacatgaacagtcaccaagaccaatccag 377
Query: 61 agccccaaagcccgtttccacactgtctctctggtaaggcgttctgaggtcttatcactt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 376 agccccaaagcccgtttccacactgtctctctggtgaggcgttctgaggtcttatcactt 317
Query: 121 ttgtaagctcagactgaacctgtcccagagaggcaggaagggcaaagattctgtgtctcc 180
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 316 ttgtaagctcagactgaacctgtcccagagaggcaggaagggcaaagagccggtgtctcc 257
Query: 181 ctggaggttgggtacccttcactatttcatctccaaagtgtctttctaagatgttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctggaggttgggtacccttcactatttcatctccaaagtgtctttctaagatgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
