BAC Information

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BAC

Clone NameMSMg01-499D17
Chromosome9 (Build37)5 (Build37)
Map Location 66,170,866 - 66,171,11351,894,101 - 51,894,724
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneClpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499D17.T7 (MSMg01no499_d17.b1)MSMg01-499D17.TJ (MSMg01no499_d17.g1)
ACCAG575365AG575366
length697711
length of high quality
(start - end)		248 (51 - 298)624 (59 - 682)
definitionCHROMAT_FILE: MSMg01no499_d17.b1 PHD_FILE: MSMg01no499_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:34 2005CHROMAT_FILE: MSMg01no499_d17.g1 PHD_FILE: MSMg01no499_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:34 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,170,866 - 66,171,113)(51,894,101 - 51,894,724)
sequence
CGACTACTATAGTCAGAGGACTCGCGGAATTCACAAGGTCTTCTTTATAC
TCTATGTATGTGGGATGGGTGGGAGGGGGTGTGCNTGTCCACATACATTT
ACATGTGTGTGGGAGTGTGTGTGTAAATGTAATTCTTGGGGGTTTCTATG
CTCCTTTTGCTACCAAAATAACTTCAGGGCATTTCTACACCTGTTCTAGC
CCATTTTAGCTCCTGCATTAAGACACAGAGACCTATTATTTTTATTAACA
AGCTGCAAGCACTAATAGCTGGTCAGATTCTGATCTATTCTAACCTGATT
ATTTTGCTACTACCCAGCCAAATGATTCTGTACCTGCAACTGAGTCTTGT
CTTGGCTCACTCTGCTCCAGGTGTGTTCTCATGTTTGTTTTCCCATTGAG
ACTTCATGGTGAATCCTTCTGGACTCTCTACATGGTCTCTCCACTTCTTC
TCCCTCTTCTTCTCTACTCTCATCTCTCTGGTAACCCCTGCTTTCATTTC
TCTGGAAGTCCTGCCCTATTCTCTTCTGCCCAGCTAATTGGGTGAACAAC
TCTTTTACAACTGATCATATTTATTGTAAAAAAATTTTTTACATTTCACA
GATACCAGATAAACACTCGACTTGTGCCATATGTTCTACTTTTACCATAT
GTCTGGCTATACCATTCTGCATCTTACTATTCAGTGACATTAAATCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGTGCATGATGAGAGATTTAGGTAAGGGTGCCTATGATTAAC
TGGATTCCTCATTTGGGCTTTCAAATACATCATAAAAGTCACTTCTCTAT
TTACTTATTTGAACTCTTGGTAGGATGTAGTGGAATGAATAATCCAAAAT
AGTGGATAATCCAAAAATGTCATTTATATTTGGCTTTGGAATACACTACC
AGATGTTACTCTAGCAGATTTCCCTTACTAATTAGGCCTCACTTAAAGTA
GAAGTTAATTTCATCTTCATTAGCTGTTTCCAAATCAGCAGGATAGGGCA
AGAAAGAGGCCTAGGGCATGCTGGGTACTTGGGGGAAGCTGGCCCAAAGT
GGAAAGCCAGTGGTAGATTGTGCACATAGGAAGAAATTCAAAATGTGGGT
AATCAAGATGATGGGTATGTATACTGGAAAATGCTTCTGAGAACCAGCTT
GAAGAATTCTCAAATTGCATTGCCACTTTTTCTCTTATTAATCATACATA
CGTAAGAAGAAAAAGGTGTTCTGTAGCAGGAATGAGGCAGAAAACCTGAA
ACTTTGCATAGAGAAAGGTAGAGACACTGGAAGGTTAAGTGACCTCTCAC
ACAGATTGATCTTTGAGTCAACAGTTCCTAAGAAACTGAAATTGATTAAT
GAGTGATAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_d17.b1 MSMg01no499_d17.b1 CHROMAT_FILE:
MSMg01no499_d17.b1 PHD_FILE: MSMg01no499_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:34 2005
         (248 letters)



>mm_chr9_66170666_66171313
          Length = 648

 Score =  474 bits (245), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgtatgtgggatgggtgggagggggtgtgcntgtccacatacatttacatgtgtgt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tctatgtatgtgggatgggtgggagggggtgtgcatgtccacatacatttacatgtgtgt 260

                                                                       
Query: 61  gggagtgtgtgtgtaaatgtaattcttgggggtttctatgctccttttgctaccaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagtgtgtgtgtaaatgtaattcttgggggtttctatgctccttttgctaccaaaata 320

                                                                       
Query: 121 acttcagggcatttctacacctgttctagcccattttagctcctgcattaagacacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcagggcatttctacacctgttctagcccattttagctcctgcattaagacacagag 380

                                                                       
Query: 181 acctattatttttattaacaagctgcaagcactaatagctggtcagattctgatctattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctattatttttattaacaagctgcaagcactaatagctggtcagattctgatctattc 440

                   
Query: 241 taacctga 248
           ||||||||
Sbjct: 441 taacctga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no499_d17.g1 MSMg01no499_d17.g1 CHROMAT_FILE:
MSMg01no499_d17.g1 PHD_FILE: MSMg01no499_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:34 2005
         (624 letters)



>mm_chr5_51893901_51894924
          Length = 1024

 Score = 1191 bits (616), Expect = 0.0
 Identities = 622/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcatgatgagagatttaggtaagggtgcctatgattaactggattcctcatttgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tgtgcatgatgagagatttaggtaagggtgcctatgattaactggattcctcatttgggc 765

                                                                       
Query: 61  tttcaaatacatcataaaagtcacttctctatttacttatttgaactcttggtaggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tttcaaatacatcataaaagtcacttctctatttacttatttgaactcttggtaggatgt 705

                                                                       
Query: 121 agtggaatgaataatccaaaatagtggataatccaaaaatgtcatttatatttggctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agtggaatgaataatccaaaatagtggataatccaaaaatgtcatttatatttggctttg 645

                                                                       
Query: 181 gaatacactaccagatgttactctagcagatttcccttactaattaggcctcacttaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gaatacactaccagatgttactctagcagatttcccttactaattaggcctcacttaaag 585

                                                                       
Query: 241 tagaagttaatttcatcttcattagctgtttccaaatcagcaggatagggcaagaaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tagaagttaatttcatcttcattagctgtttccaaatcagcaggatagggcaagaaagag 525

                                                                       
Query: 301 gcctagggcatgctgggtacttgggggaagctggcccaaagtggaaagccagtggtagat 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtctagggcatgctgggtacttgggggaagctggcccaaagtggaaagccagtggtagat 465

                                                                       
Query: 361 tgtgcacataggaagaaattcaaaatgtgggtaatcaagatgatgggtatgtatactgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtgcacataggaagaaattcaaaatgtgggtaatcaagatgatgggtatgtatactgga 405

                                                                       
Query: 421 aaatgcttctgagaaccagcttgaagaattctcaaattgcattgccactttttctcttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaatgcttctgagaaccagcttgaagaattctcaaattgcattgccactttttctcttat 345

                                                                       
Query: 481 taatcatacatacgtaagaagaaaaaggtgttctgtagcaggaatgaggcagaaaacctg 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 taatcatacatacataagaagaaaaaggtgttctgtagcaggaatgaggcagaaaacctg 285

                                                                       
Query: 541 aaactttgcatagagaaaggtagagacactggaaggttaagtgacctctcacacagattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaactttgcatagagaaaggtagagacactggaaggttaagtgacctctcacacagattg 225

                                   
Query: 601 atctttgagtcaacagttcctaag 624
           ||||||||||||||||||||||||
Sbjct: 224 atctttgagtcaacagttcctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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