Query= MSMg01no500_d20.b1 MSMg01no500_d20.b1 CHROMAT_FILE:
MSMg01no500_d20.b1 PHD_FILE: MSMg01no500_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:51 2005
(611 letters)
>mm_chr9_22606249_22607259
Length = 1011
Score = 1093 bits (565), Expect = 0.0
Identities = 596/611 (97%), Gaps = 8/611 (1%)
Strand = Plus / Plus
Query: 1 tctggccatttcctttctacctgactgcccgtgctggcatttgaaacagcctttttgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctggccatttcctttctacctgactgcccgtgctggcatttgaaacagccttcttgcca 260
Query: 61 tttctgtggaggtcatctgtcatgtctctggagcccagcaccccagtcctcctgcttcac 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tttctgtggaggtcatctgtcatgtctctggagcccagcaccgcagtcctcctgcttcac 320
Query: 121 acctggttctgtgcttgcctgggctctgaggcacctgcatggagttcgagtgccagtgct 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctggttctgtgtttgcctgggctctgaggcacctgcatggagttcgagtgccagtgct 380
Query: 181 ggacagccaggacttcgtgtcccctggctccgccatttctcatttataaactcccccttc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ggacagccaggactttgtgtcccctggctccgccatttctcatttataaactcccccgtc 440
Query: 241 tgtttctccacagcatctcctcatcaatccacagaagccgtgctgagtctcatcaaagca 300
||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcctccacagcatc--------aatccacagaagccgtgctgagtctcatcaaagca 492
Query: 301 gagccactggctttgtcttcctgtagatagcactggctgtttgtccatctacctgcttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagccactggctttgtcttcctgtagatagcactggctgtttgtccatctacctgcttgc 552
Query: 361 tgtaggcaggtcagtctgtctcccccctctttccttctgggctgtattcccttgtggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtaggcaggtcagtctgtctcccccctctttccttctgggctgtattcccttgtggact 612
Query: 421 ccagcagggcatgacactgttttccttcacattgtcccaacattgtcaagtgttcttctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccagcagggcatgacactgttttccttcacattgtcccaacattgtcaagtgttcttctc 672
Query: 481 tacatgtccaataaattcaagaacagattcttttgcatccacacagagttgaagcacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tacatgtccaataaattcaagaacagattcttttgcatccacacagagttgaagcacaga 732
Query: 541 attattagtctatcatcatttagaggatgaaactccacattttattataatctctcaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attattagtctatcatcatttagaggatgaaactccacattttattataatctctcaaat 792
Query: 601 aattacagatg 611
|||||||||||
Sbjct: 793 aattacagatg 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_d20.g1 MSMg01no500_d20.g1 CHROMAT_FILE:
MSMg01no500_d20.g1 PHD_FILE: MSMg01no500_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:51 2005
(631 letters)
>mm_chr9_22764996_22766027
Length = 1032
Score = 984 bits (509), Expect = 0.0
Identities = 534/551 (96%), Gaps = 15/551 (2%)
Strand = Plus / Minus
Query: 1 caagacaaaagggaagtctttacaatgaatgcccttagagcagttgagtagatacagggg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 caagacaaaagggaagtctttacaataaatgcccttagagcagttgagtagatacagggg 492
Query: 61 ggaaatgtatcgcagcgctctagccacaagtt-aaaaaaaataatccaaatcgtgcttac 119
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 ggaaatgtatcgcagcgttctagccacaagttaaaaaaaaataatccaaatcgtgcttac 432
Query: 120 atctaaataaaaatcataaaccaataactcttcctgaagaaagtgacttgtaagaggaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atctaaataaaaatcataaaccaataactcttcctgaagaaagtgacttgtaagaggaaa 372
Query: 180 acatttatttataggtcagaagtattactttttcctttagaaacagtatacataaattgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acatttatttataggtcagaagtattactttttcctttagaaacagtatacataaattgt 312
Query: 240 aatatgttaaaattaagtacttgtgttagtaaaagacataatttttcaaagattaaagat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aatatgttaaaattaagtacttgtgttagtaaaagacataatttttcaaagattaaagat 252
Query: 300 atttggattgactcttggttagttttataagttgtattttgaaaatattcacctcccaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atttggattgactcttggttagttttataagttgtattttgaaaatattcacctcccaga 192
Query: 360 cccacctccacatccctctccactccaactttatgagtttgt--------------tgtt 405
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 191 cccacctccacatccctctccactccaactttatgagtttgttgttgttgttgttgtgtt 132
Query: 406 gttgttttaacaaccattcaggttaaattgctgttgttcatatattcctaggtatatagg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gttgttttaacaaccattcaggttaaattgctgttgttcatatattcctaggtatatagg 72
Query: 466 gttatccactggagcatggtccacccaccatggaccacatccttaagaaaactgatccct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gttatccactggagcatggtccacccaccatggaccacatccttaagaaaactgatccct 12
Query: 526 cttcccctaga 536
|||||||||||
Sbjct: 11 cttcccctaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
